Strain Fitness in Serratia liquefaciens MT49 around IAI46_18465

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_18460 and IAI46_18465 are separated by 49 nucleotidesIAI46_18465 and IAI46_18470 are separated by 264 nucleotides IAI46_18460: IAI46_18460 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 3,885,661 to 3,887,388 _18460 IAI46_18465: IAI46_18465 - PTS glucose transporter subunit IIA, at 3,887,438 to 3,887,947 _18465 IAI46_18470: IAI46_18470 - HAMP domain-containing protein, at 3,888,212 to 3,889,528 _18470 Position (kb) 3887 3888Strain fitness (log2 ratio) -1 0 1 2at 3886.549 kb on - strand, within IAI46_18460at 3886.743 kb on + strand, within IAI46_18460at 3887.027 kb on + strand, within IAI46_18460at 3887.036 kb on - strand, within IAI46_18460at 3887.037 kb on + strand, within IAI46_18460at 3887.037 kb on + strand, within IAI46_18460at 3887.204 kb on + strand, within IAI46_18460at 3887.358 kb on + strandat 3887.419 kb on + strandat 3887.419 kb on + strandat 3887.559 kb on + strand, within IAI46_18465at 3887.560 kb on - strand, within IAI46_18465at 3887.945 kb on + strandat 3887.946 kb on - strandat 3887.961 kb on - strandat 3887.961 kb on - strandat 3888.010 kb on + strandat 3888.014 kb on + strandat 3888.014 kb on + strandat 3888.014 kb on + strandat 3888.015 kb on - strandat 3888.015 kb on - strandat 3888.015 kb on - strandat 3888.023 kb on + strandat 3888.023 kb on + strandat 3888.024 kb on - strandat 3888.024 kb on - strandat 3888.059 kb on - strandat 3888.082 kb on + strandat 3888.083 kb on - strandat 3888.138 kb on + strandat 3888.139 kb on - strandat 3888.139 kb on - strandat 3888.139 kb on - strandat 3888.146 kb on + strandat 3888.146 kb on + strandat 3888.146 kb on + strandat 3888.147 kb on - strandat 3888.210 kb on + strandat 3888.210 kb on + strandat 3888.211 kb on - strandat 3888.211 kb on - strandat 3888.428 kb on + strand, within IAI46_18470at 3888.511 kb on + strand, within IAI46_18470at 3888.512 kb on - strand, within IAI46_18470at 3888.559 kb on - strand, within IAI46_18470at 3888.559 kb on - strand, within IAI46_18470at 3888.559 kb on - strand, within IAI46_18470at 3888.663 kb on + strand, within IAI46_18470at 3888.727 kb on + strand, within IAI46_18470at 3888.924 kb on - strand, within IAI46_18470

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,886,549 - IAI46_18460 0.51 -0.1
3,886,743 + IAI46_18460 0.63 -1.1
3,887,027 + IAI46_18460 0.79 +0.6
3,887,036 - IAI46_18460 0.80 -0.9
3,887,037 + IAI46_18460 0.80 -0.4
3,887,037 + IAI46_18460 0.80 -1.0
3,887,204 + IAI46_18460 0.89 +0.7
3,887,358 + -0.4
3,887,419 + -0.2
3,887,419 + +0.0
3,887,559 + IAI46_18465 0.24 -0.1
3,887,560 - IAI46_18465 0.24 +0.6
3,887,945 + -0.0
3,887,946 - -1.1
3,887,961 - -0.3
3,887,961 - -0.8
3,888,010 + +1.0
3,888,014 + +0.6
3,888,014 + -0.6
3,888,014 + +0.2
3,888,015 - +0.1
3,888,015 - -0.5
3,888,015 - +0.2
3,888,023 + -0.8
3,888,023 + +0.7
3,888,024 - +1.3
3,888,024 - +0.3
3,888,059 - +0.2
3,888,082 + -0.4
3,888,083 - -0.5
3,888,138 + -0.4
3,888,139 - +0.9
3,888,139 - -0.4
3,888,139 - +0.9
3,888,146 + +0.1
3,888,146 + +0.9
3,888,146 + +0.7
3,888,147 - +0.7
3,888,210 + +0.5
3,888,210 + +0.2
3,888,211 - -0.2
3,888,211 - +1.9
3,888,428 + IAI46_18470 0.16 +0.9
3,888,511 + IAI46_18470 0.23 -0.5
3,888,512 - IAI46_18470 0.23 -0.1
3,888,559 - IAI46_18470 0.26 +0.8
3,888,559 - IAI46_18470 0.26 -0.2
3,888,559 - IAI46_18470 0.26 +0.4
3,888,663 + IAI46_18470 0.34 +1.1
3,888,727 + IAI46_18470 0.39 -0.2
3,888,924 - IAI46_18470 0.54 +0.0

Or see this region's nucleotide sequence