Strain Fitness in Serratia liquefaciens MT49 around IAI46_17065

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_17055 and IAI46_17060 are separated by 37 nucleotidesIAI46_17060 and IAI46_17065 overlap by 4 nucleotidesIAI46_17065 and IAI46_17070 overlap by 4 nucleotidesIAI46_17070 and IAI46_17075 overlap by 4 nucleotides IAI46_17055: IAI46_17055 - LacI family DNA-binding transcriptional regulator, at 3,577,946 to 3,578,977 _17055 IAI46_17060: IAI46_17060 - aspartyl/asparaginyl beta-hydroxylase domain-containing protein, at 3,579,015 to 3,579,701 _17060 IAI46_17065: IAI46_17065 - ABC transporter ATP-binding protein, at 3,579,698 to 3,580,414 _17065 IAI46_17070: IAI46_17070 - ATP-binding cassette domain-containing protein, at 3,580,411 to 3,581,286 _17070 IAI46_17075: IAI46_17075 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 3,581,283 to 3,582,569 _17075 Position (kb) 3579 3580 3581Strain fitness (log2 ratio) -1 0 1 2at 3578.835 kb on - strand, within IAI46_17055at 3578.835 kb on - strand, within IAI46_17055at 3578.849 kb on + strand, within IAI46_17055at 3578.975 kb on + strandat 3579.002 kb on + strandat 3579.014 kb on + strandat 3579.015 kb on - strandat 3579.023 kb on + strandat 3579.027 kb on + strandat 3579.028 kb on - strandat 3579.028 kb on - strandat 3579.061 kb on - strandat 3579.263 kb on + strand, within IAI46_17060at 3579.263 kb on + strand, within IAI46_17060at 3579.264 kb on - strand, within IAI46_17060at 3579.277 kb on - strand, within IAI46_17060at 3579.528 kb on - strand, within IAI46_17060at 3579.528 kb on - strand, within IAI46_17060at 3579.715 kb on - strandat 3579.740 kb on + strandat 3579.741 kb on - strandat 3580.080 kb on + strand, within IAI46_17065at 3580.188 kb on + strand, within IAI46_17065at 3580.189 kb on - strand, within IAI46_17065at 3580.189 kb on - strand, within IAI46_17065at 3580.195 kb on + strand, within IAI46_17065at 3580.196 kb on - strand, within IAI46_17065at 3580.446 kb on - strandat 3580.446 kb on - strandat 3580.467 kb on + strandat 3580.468 kb on - strandat 3580.474 kb on + strandat 3580.576 kb on + strand, within IAI46_17070at 3580.577 kb on - strand, within IAI46_17070at 3580.730 kb on + strand, within IAI46_17070at 3580.997 kb on + strand, within IAI46_17070at 3580.998 kb on - strand, within IAI46_17070at 3581.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,578,835 - IAI46_17055 0.86 +0.0
3,578,835 - IAI46_17055 0.86 +0.9
3,578,849 + IAI46_17055 0.88 +0.3
3,578,975 + -0.3
3,579,002 + -1.6
3,579,014 + +0.6
3,579,015 - +0.1
3,579,023 + -0.6
3,579,027 + +1.8
3,579,028 - -0.4
3,579,028 - +0.4
3,579,061 - +0.1
3,579,263 + IAI46_17060 0.36 +0.1
3,579,263 + IAI46_17060 0.36 +0.0
3,579,264 - IAI46_17060 0.36 +1.9
3,579,277 - IAI46_17060 0.38 -0.7
3,579,528 - IAI46_17060 0.75 +0.5
3,579,528 - IAI46_17060 0.75 +0.5
3,579,715 - -1.2
3,579,740 + +0.5
3,579,741 - +1.1
3,580,080 + IAI46_17065 0.53 +0.4
3,580,188 + IAI46_17065 0.68 +0.2
3,580,189 - IAI46_17065 0.68 -0.3
3,580,189 - IAI46_17065 0.68 +0.2
3,580,195 + IAI46_17065 0.69 +0.0
3,580,196 - IAI46_17065 0.69 -0.0
3,580,446 - +0.0
3,580,446 - -0.0
3,580,467 + -1.6
3,580,468 - -1.0
3,580,474 + -0.8
3,580,576 + IAI46_17070 0.19 +0.4
3,580,577 - IAI46_17070 0.19 +1.7
3,580,730 + IAI46_17070 0.36 +1.3
3,580,997 + IAI46_17070 0.67 +0.2
3,580,998 - IAI46_17070 0.67 +0.2
3,581,332 - +1.5

Or see this region's nucleotide sequence