Strain Fitness in Serratia liquefaciens MT49 around IAI46_16360

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16350 and IAI46_16355 are separated by 10 nucleotidesIAI46_16355 and IAI46_16360 are separated by 8 nucleotidesIAI46_16360 and IAI46_16365 are separated by 9 nucleotidesIAI46_16365 and IAI46_16370 are separated by 14 nucleotides IAI46_16350: IAI46_16350 - 1,2-phenylacetyl-CoA epoxidase subunit A, at 3,427,352 to 3,428,290 _16350 IAI46_16355: IAI46_16355 - 1,2-phenylacetyl-CoA epoxidase subunit B, at 3,428,301 to 3,428,588 _16355 IAI46_16360: IAI46_16360 - phenylacetate-CoA oxygenase subunit PaaC, at 3,428,597 to 3,429,358 _16360 IAI46_16365: IAI46_16365 - phenylacetate-CoA oxygenase subunit PaaJ, at 3,429,368 to 3,429,865 _16365 IAI46_16370: IAI46_16370 - phenylacetate-CoA oxygenase/reductase subunit PaaK, at 3,429,880 to 3,430,938 _16370 Position (kb) 3428 3429 3430Strain fitness (log2 ratio) -2 -1 0 1at 3427.601 kb on + strand, within IAI46_16350at 3427.643 kb on + strand, within IAI46_16350at 3427.673 kb on + strand, within IAI46_16350at 3427.673 kb on + strand, within IAI46_16350at 3427.674 kb on - strand, within IAI46_16350at 3427.794 kb on - strand, within IAI46_16350at 3428.186 kb on - strand, within IAI46_16350at 3428.325 kb on + strandat 3428.325 kb on + strandat 3428.326 kb on - strandat 3428.428 kb on - strand, within IAI46_16355at 3428.428 kb on - strand, within IAI46_16355at 3428.538 kb on + strand, within IAI46_16355at 3428.557 kb on - strand, within IAI46_16355at 3428.557 kb on - strand, within IAI46_16355at 3428.557 kb on - strand, within IAI46_16355at 3428.586 kb on + strandat 3428.586 kb on + strandat 3428.586 kb on + strandat 3428.586 kb on + strandat 3428.627 kb on + strandat 3428.627 kb on + strandat 3428.628 kb on - strandat 3428.742 kb on + strand, within IAI46_16360at 3428.743 kb on - strand, within IAI46_16360at 3428.918 kb on + strand, within IAI46_16360at 3429.005 kb on + strand, within IAI46_16360at 3429.367 kb on + strandat 3429.530 kb on + strand, within IAI46_16365at 3429.675 kb on + strand, within IAI46_16365at 3429.710 kb on - strand, within IAI46_16365at 3429.864 kb on - strandat 3429.864 kb on - strandat 3429.938 kb on + strandat 3429.939 kb on - strandat 3429.942 kb on + strandat 3429.942 kb on + strandat 3429.942 kb on + strandat 3429.942 kb on + strandat 3429.942 kb on + strandat 3429.943 kb on - strandat 3429.943 kb on - strandat 3429.943 kb on - strandat 3429.985 kb on + strandat 3430.011 kb on - strand, within IAI46_16370at 3430.223 kb on - strand, within IAI46_16370

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,427,601 + IAI46_16350 0.27 +0.9
3,427,643 + IAI46_16350 0.31 +1.2
3,427,673 + IAI46_16350 0.34 -0.0
3,427,673 + IAI46_16350 0.34 -0.8
3,427,674 - IAI46_16350 0.34 +0.1
3,427,794 - IAI46_16350 0.47 -0.8
3,428,186 - IAI46_16350 0.89 +0.5
3,428,325 + +1.4
3,428,325 + +0.0
3,428,326 - -0.0
3,428,428 - IAI46_16355 0.44 +0.5
3,428,428 - IAI46_16355 0.44 +0.5
3,428,538 + IAI46_16355 0.82 -0.0
3,428,557 - IAI46_16355 0.89 +0.0
3,428,557 - IAI46_16355 0.89 -0.3
3,428,557 - IAI46_16355 0.89 +1.0
3,428,586 + -0.2
3,428,586 + -0.2
3,428,586 + -0.8
3,428,586 + +0.6
3,428,627 + +0.0
3,428,627 + +0.4
3,428,628 - -0.0
3,428,742 + IAI46_16360 0.19 +0.1
3,428,743 - IAI46_16360 0.19 +0.3
3,428,918 + IAI46_16360 0.42 -0.7
3,429,005 + IAI46_16360 0.54 +0.5
3,429,367 + +0.2
3,429,530 + IAI46_16365 0.33 +0.7
3,429,675 + IAI46_16365 0.62 +0.1
3,429,710 - IAI46_16365 0.69 -1.6
3,429,864 - -0.0
3,429,864 - -0.0
3,429,938 + -0.2
3,429,939 - +0.8
3,429,942 + -1.2
3,429,942 + +0.2
3,429,942 + -0.0
3,429,942 + +1.1
3,429,942 + -0.2
3,429,943 - -0.8
3,429,943 - +1.7
3,429,943 - -1.8
3,429,985 + +0.3
3,430,011 - IAI46_16370 0.12 +0.1
3,430,223 - IAI46_16370 0.32 -2.0

Or see this region's nucleotide sequence