Strain Fitness in Serratia liquefaciens MT49 around IAI46_16290

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16285 and IAI46_16290 are separated by 112 nucleotidesIAI46_16290 and IAI46_16295 are separated by 113 nucleotides IAI46_16285: IAI46_16285 - endonuclease/exonuclease/phosphatase family protein, at 3,413,640 to 3,414,719 _16285 IAI46_16290: IAI46_16290 - SDR family oxidoreductase, at 3,414,832 to 3,415,884 _16290 IAI46_16295: IAI46_16295 - LysR family transcriptional regulator, at 3,415,998 to 3,416,930 _16295 Position (kb) 3414 3415 3416Strain fitness (log2 ratio) -1 0 1 2at 3414.238 kb on + strand, within IAI46_16285at 3414.369 kb on + strand, within IAI46_16285at 3414.369 kb on + strand, within IAI46_16285at 3414.375 kb on - strand, within IAI46_16285at 3414.397 kb on - strand, within IAI46_16285at 3414.481 kb on + strand, within IAI46_16285at 3414.592 kb on - strand, within IAI46_16285at 3414.699 kb on + strandat 3414.700 kb on - strandat 3414.723 kb on + strandat 3414.780 kb on - strandat 3414.841 kb on - strandat 3414.950 kb on + strand, within IAI46_16290at 3415.083 kb on + strand, within IAI46_16290at 3415.084 kb on - strand, within IAI46_16290at 3415.116 kb on - strand, within IAI46_16290at 3415.116 kb on - strand, within IAI46_16290at 3415.173 kb on + strand, within IAI46_16290at 3415.174 kb on - strand, within IAI46_16290at 3415.325 kb on + strand, within IAI46_16290at 3415.439 kb on + strand, within IAI46_16290at 3415.458 kb on + strand, within IAI46_16290at 3415.539 kb on - strand, within IAI46_16290at 3415.675 kb on - strand, within IAI46_16290at 3415.745 kb on + strand, within IAI46_16290at 3415.884 kb on + strandat 3415.884 kb on + strandat 3415.885 kb on - strandat 3415.960 kb on - strandat 3415.969 kb on + strandat 3415.970 kb on - strandat 3415.972 kb on - strandat 3415.972 kb on - strandat 3415.976 kb on - strandat 3415.976 kb on - strandat 3416.441 kb on - strand, within IAI46_16295at 3416.441 kb on - strand, within IAI46_16295at 3416.509 kb on - strand, within IAI46_16295at 3416.605 kb on + strand, within IAI46_16295at 3416.605 kb on + strand, within IAI46_16295at 3416.605 kb on + strand, within IAI46_16295at 3416.606 kb on - strand, within IAI46_16295at 3416.664 kb on - strand, within IAI46_16295at 3416.664 kb on - strand, within IAI46_16295at 3416.856 kb on + strandat 3416.879 kb on + strandat 3416.880 kb on - strandat 3416.880 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,414,238 + IAI46_16285 0.55 -0.2
3,414,369 + IAI46_16285 0.68 -0.8
3,414,369 + IAI46_16285 0.68 +0.2
3,414,375 - IAI46_16285 0.68 +0.4
3,414,397 - IAI46_16285 0.70 -0.2
3,414,481 + IAI46_16285 0.78 +1.5
3,414,592 - IAI46_16285 0.88 -0.0
3,414,699 + +0.6
3,414,700 - -0.3
3,414,723 + +0.8
3,414,780 - +0.6
3,414,841 - +0.5
3,414,950 + IAI46_16290 0.11 +0.7
3,415,083 + IAI46_16290 0.24 +0.4
3,415,084 - IAI46_16290 0.24 +0.8
3,415,116 - IAI46_16290 0.27 -0.5
3,415,116 - IAI46_16290 0.27 +0.7
3,415,173 + IAI46_16290 0.32 +1.0
3,415,174 - IAI46_16290 0.32 -0.4
3,415,325 + IAI46_16290 0.47 +0.1
3,415,439 + IAI46_16290 0.58 +0.4
3,415,458 + IAI46_16290 0.59 -0.6
3,415,539 - IAI46_16290 0.67 -0.2
3,415,675 - IAI46_16290 0.80 -0.4
3,415,745 + IAI46_16290 0.87 +0.2
3,415,884 + +0.2
3,415,884 + -0.7
3,415,885 - -0.2
3,415,960 - +0.5
3,415,969 + -0.4
3,415,970 - -0.2
3,415,972 - +2.3
3,415,972 - +0.7
3,415,976 - -1.2
3,415,976 - -0.2
3,416,441 - IAI46_16295 0.47 -0.3
3,416,441 - IAI46_16295 0.47 -0.8
3,416,509 - IAI46_16295 0.55 +1.1
3,416,605 + IAI46_16295 0.65 +0.2
3,416,605 + IAI46_16295 0.65 +0.0
3,416,605 + IAI46_16295 0.65 -0.1
3,416,606 - IAI46_16295 0.65 +0.5
3,416,664 - IAI46_16295 0.71 -0.7
3,416,664 - IAI46_16295 0.71 -0.5
3,416,856 + -0.1
3,416,879 + +0.2
3,416,880 - +0.9
3,416,880 - +0.9

Or see this region's nucleotide sequence