Strain Fitness in Serratia liquefaciens MT49 around IAI46_16040

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16030 and IAI46_16035 are separated by 181 nucleotidesIAI46_16035 and IAI46_16040 are separated by 32 nucleotidesIAI46_16040 and IAI46_16045 are separated by 4 nucleotidesIAI46_16045 and IAI46_16050 overlap by 4 nucleotides IAI46_16030: IAI46_16030 - Tar ligand binding domain-containing protein, at 3,361,853 to 3,363,523 _16030 IAI46_16035: IAI46_16035 - chemotaxis protein CheW, at 3,363,705 to 3,364,205 _16035 IAI46_16040: IAI46_16040 - chemotaxis protein CheA, at 3,364,238 to 3,366,211 _16040 IAI46_16045: IAI46_16045 - flagellar motor protein MotB, at 3,366,216 to 3,367,181 _16045 IAI46_16050: IAI46_16050 - flagellar motor stator protein MotA, at 3,367,178 to 3,368,068 _16050 Position (kb) 3364 3365 3366 3367Strain fitness (log2 ratio) -2 -1 0 1at 3363.563 kb on + strandat 3363.621 kb on + strandat 3363.622 kb on - strandat 3364.056 kb on - strand, within IAI46_16035at 3364.109 kb on + strand, within IAI46_16035at 3364.139 kb on + strand, within IAI46_16035at 3364.964 kb on - strand, within IAI46_16040at 3365.207 kb on + strand, within IAI46_16040at 3365.207 kb on + strand, within IAI46_16040at 3365.211 kb on + strand, within IAI46_16040at 3365.227 kb on + strand, within IAI46_16040at 3365.580 kb on - strand, within IAI46_16040at 3365.920 kb on + strand, within IAI46_16040at 3365.950 kb on + strand, within IAI46_16040at 3366.187 kb on - strandat 3366.196 kb on + strandat 3366.196 kb on + strandat 3366.196 kb on + strandat 3366.200 kb on - strandat 3366.569 kb on - strand, within IAI46_16045at 3366.596 kb on + strand, within IAI46_16045at 3366.680 kb on - strand, within IAI46_16045at 3366.680 kb on - strand, within IAI46_16045at 3366.680 kb on - strand, within IAI46_16045at 3366.688 kb on - strand, within IAI46_16045at 3367.096 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,363,563 + -0.3
3,363,621 + +1.1
3,363,622 - -1.4
3,364,056 - IAI46_16035 0.70 +0.4
3,364,109 + IAI46_16035 0.81 +0.5
3,364,139 + IAI46_16035 0.87 -0.0
3,364,964 - IAI46_16040 0.37 -1.1
3,365,207 + IAI46_16040 0.49 -0.1
3,365,207 + IAI46_16040 0.49 -0.3
3,365,211 + IAI46_16040 0.49 +0.7
3,365,227 + IAI46_16040 0.50 +0.6
3,365,580 - IAI46_16040 0.68 -0.8
3,365,920 + IAI46_16040 0.85 +0.8
3,365,950 + IAI46_16040 0.87 +0.5
3,366,187 - -0.5
3,366,196 + +0.7
3,366,196 + -0.2
3,366,196 + -0.3
3,366,200 - +0.6
3,366,569 - IAI46_16045 0.37 +0.6
3,366,596 + IAI46_16045 0.39 +0.5
3,366,680 - IAI46_16045 0.48 -2.0
3,366,680 - IAI46_16045 0.48 +0.3
3,366,680 - IAI46_16045 0.48 -0.1
3,366,688 - IAI46_16045 0.49 -0.5
3,367,096 + +1.0

Or see this region's nucleotide sequence