Strain Fitness in Serratia liquefaciens MT49 around IAI46_15855

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15845 and IAI46_15850 overlap by 8 nucleotidesIAI46_15850 and IAI46_15855 overlap by 1 nucleotidesIAI46_15855 and IAI46_15860 are separated by 22 nucleotidesIAI46_15860 and IAI46_15865 overlap by 4 nucleotides IAI46_15845: IAI46_15845 - flagellar motor switch protein FliG, at 3,328,743 to 3,329,735 _15845 IAI46_15850: IAI46_15850 - flagellar assembly protein FliH, at 3,329,728 to 3,330,432 _15850 IAI46_15855: IAI46_15855 - flagellum-specific ATP synthase FliI, at 3,330,432 to 3,331,793 _15855 IAI46_15860: IAI46_15860 - flagella biosynthesis chaperone FliJ, at 3,331,816 to 3,332,262 _15860 IAI46_15865: IAI46_15865 - flagellar hook-length control protein FliK, at 3,332,259 to 3,333,473 _15865 Position (kb) 3330 3331 3332Strain fitness (log2 ratio) -2 -1 0 1 2at 3329.591 kb on + strand, within IAI46_15845at 3329.592 kb on - strand, within IAI46_15845at 3329.660 kb on + strandat 3329.727 kb on + strandat 3329.727 kb on + strandat 3329.727 kb on + strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.728 kb on - strandat 3329.745 kb on + strandat 3329.745 kb on + strandat 3329.745 kb on + strandat 3329.746 kb on - strandat 3329.746 kb on - strandat 3329.780 kb on + strandat 3330.253 kb on + strand, within IAI46_15850at 3330.253 kb on + strand, within IAI46_15850at 3330.430 kb on + strandat 3330.562 kb on + strandat 3330.749 kb on + strand, within IAI46_15855at 3331.318 kb on - strand, within IAI46_15855at 3331.620 kb on + strand, within IAI46_15855at 3331.656 kb on + strand, within IAI46_15855at 3331.720 kb on - strandat 3331.868 kb on + strand, within IAI46_15860at 3331.869 kb on - strand, within IAI46_15860at 3331.869 kb on - strand, within IAI46_15860at 3332.020 kb on + strand, within IAI46_15860at 3332.020 kb on + strand, within IAI46_15860at 3332.021 kb on - strand, within IAI46_15860at 3332.021 kb on - strand, within IAI46_15860at 3332.252 kb on + strandat 3332.252 kb on + strandat 3332.252 kb on + strandat 3332.253 kb on - strandat 3332.253 kb on - strandat 3332.513 kb on - strand, within IAI46_15865at 3332.556 kb on - strand, within IAI46_15865

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,329,591 + IAI46_15845 0.85 -0.6
3,329,592 - IAI46_15845 0.85 -0.3
3,329,660 + +0.6
3,329,727 + +0.2
3,329,727 + +0.6
3,329,727 + -0.1
3,329,728 - -1.3
3,329,728 - +1.3
3,329,728 - +0.3
3,329,728 - +0.9
3,329,728 - -0.5
3,329,728 - -0.8
3,329,728 - +1.1
3,329,745 + -0.9
3,329,745 + +0.6
3,329,745 + +0.5
3,329,746 - -0.3
3,329,746 - -1.5
3,329,780 + +0.4
3,330,253 + IAI46_15850 0.74 +0.6
3,330,253 + IAI46_15850 0.74 +0.1
3,330,430 + -0.8
3,330,562 + -0.5
3,330,749 + IAI46_15855 0.23 +0.0
3,331,318 - IAI46_15855 0.65 +0.4
3,331,620 + IAI46_15855 0.87 +0.1
3,331,656 + IAI46_15855 0.90 -0.1
3,331,720 - +0.2
3,331,868 + IAI46_15860 0.12 +0.9
3,331,869 - IAI46_15860 0.12 +0.8
3,331,869 - IAI46_15860 0.12 -2.4
3,332,020 + IAI46_15860 0.46 +0.5
3,332,020 + IAI46_15860 0.46 -0.6
3,332,021 - IAI46_15860 0.46 +0.5
3,332,021 - IAI46_15860 0.46 +2.0
3,332,252 + +0.3
3,332,252 + -0.7
3,332,252 + +0.2
3,332,253 - -0.4
3,332,253 - +0.8
3,332,513 - IAI46_15865 0.21 -0.3
3,332,556 - IAI46_15865 0.24 +0.7

Or see this region's nucleotide sequence