Strain Fitness in Serratia liquefaciens MT49 around IAI46_15005

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_15000 and IAI46_15005 are separated by 214 nucleotidesIAI46_15005 and IAI46_15010 are separated by 8 nucleotidesIAI46_15010 and IAI46_15015 are separated by 111 nucleotides IAI46_15000: IAI46_15000 - hypothetical protein, at 3,165,219 to 3,167,018 _15000 IAI46_15005: IAI46_15005 - hypothetical protein, at 3,167,233 to 3,167,640 _15005 IAI46_15010: IAI46_15010 - hypothetical protein, at 3,167,649 to 3,167,990 _15010 IAI46_15015: IAI46_15015 - DUF3383 domain-containing protein, at 3,168,102 to 3,169,583 _15015 Position (kb) 3167 3168Strain fitness (log2 ratio) -2 -1 0 1 2at 3166.236 kb on + strand, within IAI46_15000at 3166.237 kb on - strand, within IAI46_15000at 3166.237 kb on - strand, within IAI46_15000at 3166.239 kb on + strand, within IAI46_15000at 3166.240 kb on - strand, within IAI46_15000at 3166.252 kb on + strand, within IAI46_15000at 3166.327 kb on - strand, within IAI46_15000at 3166.346 kb on + strand, within IAI46_15000at 3166.513 kb on - strand, within IAI46_15000at 3166.547 kb on + strand, within IAI46_15000at 3166.588 kb on - strand, within IAI46_15000at 3166.588 kb on - strand, within IAI46_15000at 3166.588 kb on - strand, within IAI46_15000at 3166.596 kb on - strand, within IAI46_15000at 3166.613 kb on + strand, within IAI46_15000at 3166.614 kb on - strand, within IAI46_15000at 3166.617 kb on + strand, within IAI46_15000at 3166.618 kb on - strand, within IAI46_15000at 3166.629 kb on + strand, within IAI46_15000at 3166.629 kb on + strand, within IAI46_15000at 3166.629 kb on + strand, within IAI46_15000at 3166.630 kb on - strand, within IAI46_15000at 3166.630 kb on - strand, within IAI46_15000at 3166.748 kb on + strand, within IAI46_15000at 3166.749 kb on - strand, within IAI46_15000at 3166.769 kb on + strand, within IAI46_15000at 3166.815 kb on - strand, within IAI46_15000at 3166.824 kb on + strand, within IAI46_15000at 3166.874 kb on + strandat 3167.006 kb on + strandat 3167.006 kb on + strandat 3167.006 kb on + strandat 3167.047 kb on - strandat 3167.055 kb on + strandat 3167.055 kb on + strandat 3167.055 kb on + strandat 3167.107 kb on - strandat 3167.165 kb on + strandat 3167.165 kb on + strandat 3167.177 kb on + strandat 3167.177 kb on + strandat 3167.178 kb on - strandat 3167.196 kb on - strandat 3167.196 kb on - strandat 3167.219 kb on + strandat 3167.219 kb on + strandat 3167.220 kb on - strandat 3167.287 kb on + strand, within IAI46_15005at 3167.292 kb on + strand, within IAI46_15005at 3167.293 kb on - strand, within IAI46_15005at 3167.305 kb on - strand, within IAI46_15005at 3167.497 kb on + strand, within IAI46_15005at 3167.576 kb on + strand, within IAI46_15005at 3167.618 kb on + strandat 3167.651 kb on - strandat 3167.657 kb on + strandat 3167.657 kb on + strandat 3167.657 kb on + strandat 3167.674 kb on - strandat 3167.700 kb on - strand, within IAI46_15010at 3167.738 kb on + strand, within IAI46_15010at 3167.739 kb on - strand, within IAI46_15010at 3167.748 kb on + strand, within IAI46_15010at 3167.769 kb on - strand, within IAI46_15010at 3167.807 kb on + strand, within IAI46_15010at 3167.808 kb on - strand, within IAI46_15010at 3167.866 kb on + strand, within IAI46_15010at 3167.867 kb on - strand, within IAI46_15010at 3167.870 kb on + strand, within IAI46_15010at 3167.871 kb on - strand, within IAI46_15010at 3167.932 kb on - strand, within IAI46_15010at 3167.932 kb on - strand, within IAI46_15010at 3167.932 kb on - strand, within IAI46_15010at 3167.932 kb on - strand, within IAI46_15010at 3168.026 kb on + strandat 3168.026 kb on + strandat 3168.075 kb on - strandat 3168.157 kb on + strandat 3168.160 kb on + strandat 3168.161 kb on - strandat 3168.161 kb on - strandat 3168.254 kb on + strand, within IAI46_15015at 3168.254 kb on + strand, within IAI46_15015at 3168.255 kb on - strand, within IAI46_15015at 3168.257 kb on + strand, within IAI46_15015at 3168.257 kb on + strand, within IAI46_15015at 3168.258 kb on - strand, within IAI46_15015at 3168.398 kb on - strand, within IAI46_15015at 3168.403 kb on + strand, within IAI46_15015at 3168.404 kb on - strand, within IAI46_15015at 3168.483 kb on + strand, within IAI46_15015at 3168.548 kb on + strand, within IAI46_15015at 3168.549 kb on - strand, within IAI46_15015at 3168.549 kb on - strand, within IAI46_15015at 3168.549 kb on - strand, within IAI46_15015at 3168.549 kb on - strand, within IAI46_15015at 3168.549 kb on - strand, within IAI46_15015at 3168.569 kb on - strand, within IAI46_15015at 3168.569 kb on - strand, within IAI46_15015at 3168.592 kb on + strand, within IAI46_15015at 3168.609 kb on - strand, within IAI46_15015

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,166,236 + IAI46_15000 0.56 +0.5
3,166,237 - IAI46_15000 0.57 +0.1
3,166,237 - IAI46_15000 0.57 -0.2
3,166,239 + IAI46_15000 0.57 -0.7
3,166,240 - IAI46_15000 0.57 +2.0
3,166,252 + IAI46_15000 0.57 +0.2
3,166,327 - IAI46_15000 0.62 +0.5
3,166,346 + IAI46_15000 0.63 -0.1
3,166,513 - IAI46_15000 0.72 -0.4
3,166,547 + IAI46_15000 0.74 +0.2
3,166,588 - IAI46_15000 0.76 +0.3
3,166,588 - IAI46_15000 0.76 +0.6
3,166,588 - IAI46_15000 0.76 -1.1
3,166,596 - IAI46_15000 0.77 -1.4
3,166,613 + IAI46_15000 0.77 -0.3
3,166,614 - IAI46_15000 0.78 -0.6
3,166,617 + IAI46_15000 0.78 -0.4
3,166,618 - IAI46_15000 0.78 -0.4
3,166,629 + IAI46_15000 0.78 -1.0
3,166,629 + IAI46_15000 0.78 -0.7
3,166,629 + IAI46_15000 0.78 +0.6
3,166,630 - IAI46_15000 0.78 +0.5
3,166,630 - IAI46_15000 0.78 -0.7
3,166,748 + IAI46_15000 0.85 +0.2
3,166,749 - IAI46_15000 0.85 -1.0
3,166,769 + IAI46_15000 0.86 +0.3
3,166,815 - IAI46_15000 0.89 +1.0
3,166,824 + IAI46_15000 0.89 -0.0
3,166,874 + -0.4
3,167,006 + +0.3
3,167,006 + +0.8
3,167,006 + +0.5
3,167,047 - -0.3
3,167,055 + +0.6
3,167,055 + -1.1
3,167,055 + +0.2
3,167,107 - +0.3
3,167,165 + +1.0
3,167,165 + +1.2
3,167,177 + -0.1
3,167,177 + -0.1
3,167,178 - +0.9
3,167,196 - +0.1
3,167,196 - -1.4
3,167,219 + +0.1
3,167,219 + +0.5
3,167,220 - +0.5
3,167,287 + IAI46_15005 0.13 -0.2
3,167,292 + IAI46_15005 0.14 +0.4
3,167,293 - IAI46_15005 0.15 +0.7
3,167,305 - IAI46_15005 0.18 +0.8
3,167,497 + IAI46_15005 0.65 +1.7
3,167,576 + IAI46_15005 0.84 +1.3
3,167,618 + +1.5
3,167,651 - -0.7
3,167,657 + +1.1
3,167,657 + +0.2
3,167,657 + +0.7
3,167,674 - -0.7
3,167,700 - IAI46_15010 0.15 -0.2
3,167,738 + IAI46_15010 0.26 -0.9
3,167,739 - IAI46_15010 0.26 -0.4
3,167,748 + IAI46_15010 0.29 +0.1
3,167,769 - IAI46_15010 0.35 -0.1
3,167,807 + IAI46_15010 0.46 -0.1
3,167,808 - IAI46_15010 0.46 +1.5
3,167,866 + IAI46_15010 0.63 +1.0
3,167,867 - IAI46_15010 0.64 -0.1
3,167,870 + IAI46_15010 0.65 +0.2
3,167,871 - IAI46_15010 0.65 +1.0
3,167,932 - IAI46_15010 0.83 +1.5
3,167,932 - IAI46_15010 0.83 -0.0
3,167,932 - IAI46_15010 0.83 -0.9
3,167,932 - IAI46_15010 0.83 +1.2
3,168,026 + +0.1
3,168,026 + +0.4
3,168,075 - -0.1
3,168,157 + -0.4
3,168,160 + +0.5
3,168,161 - +1.5
3,168,161 - +0.3
3,168,254 + IAI46_15015 0.10 +1.5
3,168,254 + IAI46_15015 0.10 +0.1
3,168,255 - IAI46_15015 0.10 +0.8
3,168,257 + IAI46_15015 0.10 +0.6
3,168,257 + IAI46_15015 0.10 -0.1
3,168,258 - IAI46_15015 0.11 +0.5
3,168,398 - IAI46_15015 0.20 -0.3
3,168,403 + IAI46_15015 0.20 -0.9
3,168,404 - IAI46_15015 0.20 -1.1
3,168,483 + IAI46_15015 0.26 -0.1
3,168,548 + IAI46_15015 0.30 +0.9
3,168,549 - IAI46_15015 0.30 -1.2
3,168,549 - IAI46_15015 0.30 -0.7
3,168,549 - IAI46_15015 0.30 +0.1
3,168,549 - IAI46_15015 0.30 -1.0
3,168,549 - IAI46_15015 0.30 -2.3
3,168,569 - IAI46_15015 0.32 -0.9
3,168,569 - IAI46_15015 0.32 -0.1
3,168,592 + IAI46_15015 0.33 +0.6
3,168,609 - IAI46_15015 0.34 +0.8

Or see this region's nucleotide sequence