Strain Fitness in Serratia liquefaciens MT49 around IAI46_14855

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14850 and IAI46_14855 are separated by 879 nucleotidesIAI46_14855 and IAI46_14860 are separated by 222 nucleotidesIAI46_14860 and IAI46_14865 are separated by 38 nucleotides IAI46_14850: IAI46_14850 - DUF2627 domain-containing protein, at 3,144,404 to 3,144,520 _14850 IAI46_14855: IAI46_14855 - MBL fold metallo-hydrolase, at 3,145,400 to 3,146,398 _14855 IAI46_14860: IAI46_14860 - hypothetical protein, at 3,146,621 to 3,146,911 _14860 IAI46_14865: IAI46_14865 - amino acid permease, at 3,146,950 to 3,148,317 _14865 Position (kb) 3145 3146 3147Strain fitness (log2 ratio) -2 -1 0 1 2at 3144.405 kb on + strandat 3144.406 kb on - strandat 3144.410 kb on - strandat 3144.410 kb on - strandat 3144.410 kb on - strandat 3144.410 kb on - strandat 3144.410 kb on - strandat 3144.443 kb on - strand, within IAI46_14850at 3144.443 kb on - strand, within IAI46_14850at 3144.487 kb on + strand, within IAI46_14850at 3144.521 kb on - strandat 3144.523 kb on - strandat 3144.523 kb on - strandat 3144.562 kb on + strandat 3144.563 kb on - strandat 3144.637 kb on + strandat 3144.638 kb on - strandat 3144.640 kb on - strandat 3144.645 kb on + strandat 3144.646 kb on - strandat 3144.646 kb on - strandat 3144.646 kb on - strandat 3144.770 kb on + strandat 3144.770 kb on + strandat 3144.770 kb on + strandat 3144.771 kb on - strandat 3144.771 kb on - strandat 3144.771 kb on - strandat 3144.771 kb on - strandat 3144.771 kb on - strandat 3144.791 kb on - strandat 3144.858 kb on + strandat 3144.917 kb on - strandat 3144.957 kb on + strandat 3144.957 kb on + strandat 3144.957 kb on + strandat 3144.958 kb on - strandat 3145.035 kb on + strandat 3145.036 kb on - strandat 3145.057 kb on + strandat 3145.058 kb on - strandat 3145.058 kb on - strandat 3145.109 kb on + strandat 3145.165 kb on + strandat 3145.327 kb on + strandat 3145.327 kb on + strandat 3145.402 kb on - strandat 3145.409 kb on - strandat 3145.490 kb on + strandat 3145.582 kb on - strand, within IAI46_14855at 3145.609 kb on + strand, within IAI46_14855at 3145.609 kb on + strand, within IAI46_14855at 3145.609 kb on + strand, within IAI46_14855at 3145.609 kb on + strand, within IAI46_14855at 3145.641 kb on + strand, within IAI46_14855at 3145.775 kb on + strand, within IAI46_14855at 3145.936 kb on + strand, within IAI46_14855at 3146.006 kb on - strand, within IAI46_14855at 3146.019 kb on - strand, within IAI46_14855at 3146.182 kb on + strand, within IAI46_14855at 3146.231 kb on - strand, within IAI46_14855at 3146.323 kb on + strandat 3146.324 kb on - strandat 3146.324 kb on - strandat 3146.335 kb on + strandat 3146.335 kb on + strandat 3146.377 kb on - strandat 3146.377 kb on - strandat 3146.377 kb on - strandat 3146.377 kb on - strandat 3146.379 kb on + strandat 3146.380 kb on - strandat 3146.450 kb on - strandat 3146.450 kb on - strandat 3146.553 kb on + strandat 3146.590 kb on + strandat 3146.591 kb on - strandat 3146.596 kb on + strandat 3146.597 kb on - strandat 3146.620 kb on + strandat 3146.632 kb on + strandat 3146.708 kb on + strand, within IAI46_14860at 3146.796 kb on + strand, within IAI46_14860at 3146.797 kb on - strand, within IAI46_14860at 3146.807 kb on - strand, within IAI46_14860at 3146.897 kb on - strandat 3147.060 kb on - strandat 3147.076 kb on + strandat 3147.077 kb on - strandat 3147.077 kb on - strandat 3147.176 kb on - strand, within IAI46_14865at 3147.266 kb on + strand, within IAI46_14865at 3147.267 kb on - strand, within IAI46_14865at 3147.278 kb on - strand, within IAI46_14865

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,144,405 + -2.1
3,144,406 - -1.1
3,144,410 - +0.1
3,144,410 - -0.4
3,144,410 - +0.5
3,144,410 - -1.0
3,144,410 - +0.1
3,144,443 - IAI46_14850 0.33 +0.6
3,144,443 - IAI46_14850 0.33 +0.0
3,144,487 + IAI46_14850 0.71 -0.3
3,144,521 - +1.1
3,144,523 - -0.5
3,144,523 - -0.9
3,144,562 + -0.3
3,144,563 - +0.2
3,144,637 + +0.4
3,144,638 - +0.1
3,144,640 - -0.2
3,144,645 + -0.3
3,144,646 - -0.3
3,144,646 - +1.2
3,144,646 - +0.1
3,144,770 + -0.7
3,144,770 + +0.6
3,144,770 + -1.1
3,144,771 - +0.3
3,144,771 - +0.4
3,144,771 - +1.4
3,144,771 - +0.2
3,144,771 - +0.7
3,144,791 - -0.1
3,144,858 + +0.2
3,144,917 - +0.6
3,144,957 + +0.1
3,144,957 + +1.9
3,144,957 + -1.2
3,144,958 - -0.7
3,145,035 + +1.4
3,145,036 - +0.2
3,145,057 + +0.7
3,145,058 - +0.6
3,145,058 - +1.2
3,145,109 + +0.9
3,145,165 + +0.8
3,145,327 + +0.9
3,145,327 + +0.9
3,145,402 - +0.3
3,145,409 - -0.1
3,145,490 + +0.9
3,145,582 - IAI46_14855 0.18 +0.9
3,145,609 + IAI46_14855 0.21 -0.6
3,145,609 + IAI46_14855 0.21 -0.2
3,145,609 + IAI46_14855 0.21 +0.4
3,145,609 + IAI46_14855 0.21 +0.7
3,145,641 + IAI46_14855 0.24 -1.5
3,145,775 + IAI46_14855 0.38 +0.2
3,145,936 + IAI46_14855 0.54 +1.0
3,146,006 - IAI46_14855 0.61 +0.4
3,146,019 - IAI46_14855 0.62 +0.2
3,146,182 + IAI46_14855 0.78 +0.5
3,146,231 - IAI46_14855 0.83 +0.2
3,146,323 + -1.1
3,146,324 - -0.0
3,146,324 - +1.4
3,146,335 + +0.8
3,146,335 + -1.6
3,146,377 - +1.2
3,146,377 - +0.6
3,146,377 - +0.8
3,146,377 - -1.7
3,146,379 + +0.7
3,146,380 - +0.8
3,146,450 - +0.6
3,146,450 - -1.3
3,146,553 + +0.3
3,146,590 + -0.5
3,146,591 - +0.3
3,146,596 + -0.1
3,146,597 - -0.5
3,146,620 + +0.4
3,146,632 + +0.5
3,146,708 + IAI46_14860 0.30 +0.9
3,146,796 + IAI46_14860 0.60 -1.6
3,146,797 - IAI46_14860 0.60 -0.7
3,146,807 - IAI46_14860 0.64 -0.2
3,146,897 - -0.8
3,147,060 - +0.5
3,147,076 + +1.4
3,147,077 - +0.4
3,147,077 - +0.0
3,147,176 - IAI46_14865 0.17 -0.2
3,147,266 + IAI46_14865 0.23 +1.2
3,147,267 - IAI46_14865 0.23 -0.5
3,147,278 - IAI46_14865 0.24 +0.3

Or see this region's nucleotide sequence