Strain Fitness in Serratia liquefaciens MT49 around IAI46_14335

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14330 and IAI46_14335 are separated by 24 nucleotidesIAI46_14335 and IAI46_14340 are separated by 231 nucleotides IAI46_14330: IAI46_14330 - asparaginase, at 3,040,843 to 3,041,859 _14330 IAI46_14335: IAI46_14335 - bifunctional nicotinamidase/pyrazinamidase, at 3,041,884 to 3,042,516 _14335 IAI46_14340: IAI46_14340 - glycoside hydrolase family 18 protein, at 3,042,748 to 3,044,028 _14340 Position (kb) 3041 3042 3043Strain fitness (log2 ratio) -1 0 1at 3041.003 kb on - strand, within IAI46_14330at 3041.087 kb on - strand, within IAI46_14330at 3041.323 kb on - strand, within IAI46_14330at 3041.843 kb on + strandat 3041.844 kb on - strandat 3042.057 kb on + strand, within IAI46_14335at 3042.144 kb on - strand, within IAI46_14335at 3042.222 kb on + strand, within IAI46_14335at 3042.222 kb on + strand, within IAI46_14335at 3042.222 kb on + strand, within IAI46_14335at 3042.238 kb on + strand, within IAI46_14335at 3042.344 kb on - strand, within IAI46_14335at 3042.399 kb on - strand, within IAI46_14335at 3042.423 kb on + strand, within IAI46_14335at 3042.514 kb on + strandat 3042.663 kb on - strandat 3042.663 kb on - strandat 3042.664 kb on + strandat 3042.664 kb on + strandat 3042.694 kb on + strandat 3042.699 kb on + strandat 3042.744 kb on + strandat 3042.745 kb on - strandat 3042.832 kb on + strandat 3042.833 kb on - strandat 3042.931 kb on + strand, within IAI46_14340at 3043.289 kb on + strand, within IAI46_14340at 3043.290 kb on - strand, within IAI46_14340at 3043.308 kb on + strand, within IAI46_14340at 3043.393 kb on - strand, within IAI46_14340at 3043.412 kb on - strand, within IAI46_14340at 3043.429 kb on + strand, within IAI46_14340at 3043.429 kb on + strand, within IAI46_14340at 3043.430 kb on - strand, within IAI46_14340

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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3,041,003 - IAI46_14330 0.16 +0.4
3,041,087 - IAI46_14330 0.24 -0.6
3,041,323 - IAI46_14330 0.47 -0.3
3,041,843 + +0.3
3,041,844 - +0.0
3,042,057 + IAI46_14335 0.27 +0.1
3,042,144 - IAI46_14335 0.41 +0.3
3,042,222 + IAI46_14335 0.53 -1.3
3,042,222 + IAI46_14335 0.53 +0.6
3,042,222 + IAI46_14335 0.53 -0.1
3,042,238 + IAI46_14335 0.56 -0.6
3,042,344 - IAI46_14335 0.73 -0.0
3,042,399 - IAI46_14335 0.81 +1.6
3,042,423 + IAI46_14335 0.85 +0.4
3,042,514 + -0.3
3,042,663 - -0.6
3,042,663 - +0.6
3,042,664 + +0.7
3,042,664 + +1.2
3,042,694 + -0.2
3,042,699 + -0.5
3,042,744 + +1.0
3,042,745 - +0.5
3,042,832 + +1.0
3,042,833 - +1.4
3,042,931 + IAI46_14340 0.14 +0.2
3,043,289 + IAI46_14340 0.42 +1.1
3,043,290 - IAI46_14340 0.42 +0.1
3,043,308 + IAI46_14340 0.44 +1.4
3,043,393 - IAI46_14340 0.50 -0.9
3,043,412 - IAI46_14340 0.52 -0.3
3,043,429 + IAI46_14340 0.53 +1.4
3,043,429 + IAI46_14340 0.53 +1.0
3,043,430 - IAI46_14340 0.53 +0.8

Or see this region's nucleotide sequence