Strain Fitness in Serratia liquefaciens MT49 around IAI46_13505

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13500 and IAI46_13505 are separated by 184 nucleotidesIAI46_13505 and IAI46_13510 are separated by 193 nucleotides IAI46_13500: IAI46_13500 - phage shock protein PspA, at 2,882,783 to 2,883,448 _13500 IAI46_13505: IAI46_13505 - phage shock protein operon transcriptional activator, at 2,883,633 to 2,884,640 _13505 IAI46_13510: IAI46_13510 - GTP-binding protein, at 2,884,834 to 2,886,021 _13510 Position (kb) 2883 2884 2885Strain fitness (log2 ratio) -1 0 1at 2882.635 kb on + strandat 2882.918 kb on - strand, within IAI46_13500at 2883.117 kb on - strand, within IAI46_13500at 2883.203 kb on - strand, within IAI46_13500at 2883.314 kb on - strand, within IAI46_13500at 2883.401 kb on - strandat 2883.603 kb on + strandat 2883.783 kb on + strand, within IAI46_13505at 2884.277 kb on + strand, within IAI46_13505at 2884.277 kb on + strand, within IAI46_13505at 2884.310 kb on - strand, within IAI46_13505at 2884.544 kb on + strandat 2884.544 kb on + strandat 2884.835 kb on + strandat 2884.872 kb on - strandat 2884.931 kb on - strandat 2885.046 kb on + strand, within IAI46_13510at 2885.047 kb on - strand, within IAI46_13510at 2885.057 kb on - strand, within IAI46_13510at 2885.087 kb on + strand, within IAI46_13510at 2885.088 kb on - strand, within IAI46_13510at 2885.170 kb on + strand, within IAI46_13510at 2885.170 kb on + strand, within IAI46_13510at 2885.171 kb on - strand, within IAI46_13510at 2885.171 kb on - strand, within IAI46_13510at 2885.208 kb on - strand, within IAI46_13510at 2885.296 kb on + strand, within IAI46_13510at 2885.297 kb on - strand, within IAI46_13510at 2885.480 kb on - strand, within IAI46_13510

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,882,635 + +0.5
2,882,918 - IAI46_13500 0.20 -1.0
2,883,117 - IAI46_13500 0.50 +0.4
2,883,203 - IAI46_13500 0.63 -1.7
2,883,314 - IAI46_13500 0.80 +0.1
2,883,401 - +0.9
2,883,603 + -0.2
2,883,783 + IAI46_13505 0.15 +0.0
2,884,277 + IAI46_13505 0.64 -0.6
2,884,277 + IAI46_13505 0.64 +1.1
2,884,310 - IAI46_13505 0.67 +0.4
2,884,544 + +1.5
2,884,544 + +1.5
2,884,835 + +0.1
2,884,872 - +0.6
2,884,931 - -0.4
2,885,046 + IAI46_13510 0.18 -0.0
2,885,047 - IAI46_13510 0.18 +0.2
2,885,057 - IAI46_13510 0.19 +0.2
2,885,087 + IAI46_13510 0.21 -0.3
2,885,088 - IAI46_13510 0.21 +0.9
2,885,170 + IAI46_13510 0.28 -0.2
2,885,170 + IAI46_13510 0.28 +1.1
2,885,171 - IAI46_13510 0.28 +0.4
2,885,171 - IAI46_13510 0.28 +0.4
2,885,208 - IAI46_13510 0.31 +0.2
2,885,296 + IAI46_13510 0.39 -1.0
2,885,297 - IAI46_13510 0.39 +0.4
2,885,480 - IAI46_13510 0.54 -0.0

Or see this region's nucleotide sequence