Strain Fitness in Serratia liquefaciens MT49 around IAI46_13355

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13350 and IAI46_13355 are separated by 552 nucleotidesIAI46_13355 and IAI46_13360 are separated by 20 nucleotidesIAI46_13360 and IAI46_13365 are separated by 43 nucleotides IAI46_13350: IAI46_13350 - YdbH family protein, at 2,847,915 to 2,850,527 _13350 IAI46_13355: IAI46_13355 - 2-hydroxyacid dehydrogenase, at 2,851,080 to 2,852,072 _13355 IAI46_13360: IAI46_13360 - heat shock protein HslJ, at 2,852,093 to 2,852,521 _13360 IAI46_13365: IAI46_13365 - DUF333 domain-containing protein, at 2,852,565 to 2,852,825 _13365 Position (kb) 2851 2852 2853Strain fitness (log2 ratio) -2 -1 0 1at 2850.090 kb on + strand, within IAI46_13350at 2850.091 kb on - strand, within IAI46_13350at 2850.097 kb on - strand, within IAI46_13350at 2850.109 kb on + strand, within IAI46_13350at 2850.109 kb on + strand, within IAI46_13350at 2850.112 kb on + strand, within IAI46_13350at 2850.240 kb on - strand, within IAI46_13350at 2850.508 kb on - strandat 2850.522 kb on - strandat 2850.522 kb on - strandat 2850.583 kb on - strandat 2850.587 kb on - strandat 2850.587 kb on - strandat 2850.592 kb on + strandat 2850.610 kb on - strandat 2850.683 kb on - strandat 2850.699 kb on + strandat 2850.700 kb on - strandat 2850.714 kb on + strandat 2850.714 kb on + strandat 2850.815 kb on + strandat 2850.815 kb on + strandat 2850.815 kb on + strandat 2850.815 kb on + strandat 2850.816 kb on - strandat 2850.816 kb on - strandat 2850.820 kb on - strandat 2850.824 kb on + strandat 2850.824 kb on + strandat 2850.825 kb on - strandat 2850.825 kb on - strandat 2851.152 kb on + strandat 2851.316 kb on + strand, within IAI46_13355at 2851.316 kb on + strand, within IAI46_13355at 2851.436 kb on + strand, within IAI46_13355at 2851.437 kb on - strand, within IAI46_13355at 2851.450 kb on - strand, within IAI46_13355at 2851.759 kb on + strand, within IAI46_13355at 2851.759 kb on + strand, within IAI46_13355at 2851.858 kb on - strand, within IAI46_13355at 2852.075 kb on + strandat 2852.076 kb on - strandat 2852.201 kb on - strand, within IAI46_13360at 2852.201 kb on - strand, within IAI46_13360at 2852.498 kb on - strandat 2852.514 kb on + strandat 2852.791 kb on - strand, within IAI46_13365at 2852.827 kb on - strandat 2852.891 kb on + strandat 2852.946 kb on + strandat 2852.949 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,850,090 + IAI46_13350 0.83 -0.6
2,850,091 - IAI46_13350 0.83 -0.4
2,850,097 - IAI46_13350 0.84 -1.1
2,850,109 + IAI46_13350 0.84 +0.6
2,850,109 + IAI46_13350 0.84 +0.1
2,850,112 + IAI46_13350 0.84 +0.3
2,850,240 - IAI46_13350 0.89 +0.2
2,850,508 - +0.1
2,850,522 - -0.3
2,850,522 - +0.6
2,850,583 - +1.0
2,850,587 - +0.5
2,850,587 - +0.3
2,850,592 + +0.9
2,850,610 - -0.2
2,850,683 - +0.3
2,850,699 + +0.1
2,850,700 - -0.6
2,850,714 + -0.3
2,850,714 + -0.5
2,850,815 + -0.3
2,850,815 + +0.5
2,850,815 + +1.3
2,850,815 + -0.2
2,850,816 - -0.0
2,850,816 - +0.3
2,850,820 - -0.3
2,850,824 + +1.0
2,850,824 + +0.0
2,850,825 - +0.6
2,850,825 - -0.1
2,851,152 + +1.7
2,851,316 + IAI46_13355 0.24 +0.6
2,851,316 + IAI46_13355 0.24 +0.7
2,851,436 + IAI46_13355 0.36 -0.1
2,851,437 - IAI46_13355 0.36 -1.3
2,851,450 - IAI46_13355 0.37 -0.0
2,851,759 + IAI46_13355 0.68 +0.9
2,851,759 + IAI46_13355 0.68 +0.8
2,851,858 - IAI46_13355 0.78 -0.5
2,852,075 + -0.8
2,852,076 - +0.5
2,852,201 - IAI46_13360 0.25 -1.3
2,852,201 - IAI46_13360 0.25 -1.3
2,852,498 - +0.4
2,852,514 + +0.9
2,852,791 - IAI46_13365 0.87 +0.2
2,852,827 - -0.1
2,852,891 + -2.0
2,852,946 + +0.2
2,852,949 - +0.2

Or see this region's nucleotide sequence