Strain Fitness in Serratia liquefaciens MT49 around IAI46_11615

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11610 and IAI46_11615 are separated by 204 nucleotidesIAI46_11615 and IAI46_11620 are separated by 45 nucleotides IAI46_11610: IAI46_11610 - LysR family transcriptional regulator, at 2,449,369 to 2,450,244 _11610 IAI46_11615: IAI46_11615 - beta-lactamase, at 2,450,449 to 2,451,585 _11615 IAI46_11620: IAI46_11620 - MFS transporter, at 2,451,631 to 2,452,785 _11620 Position (kb) 2450 2451 2452Strain fitness (log2 ratio) -2 -1 0 1 2at 2449.464 kb on - strand, within IAI46_11610at 2449.695 kb on - strand, within IAI46_11610at 2449.700 kb on - strand, within IAI46_11610at 2449.774 kb on - strand, within IAI46_11610at 2449.774 kb on - strand, within IAI46_11610at 2449.774 kb on - strand, within IAI46_11610at 2449.855 kb on - strand, within IAI46_11610at 2449.941 kb on + strand, within IAI46_11610at 2450.286 kb on + strandat 2450.301 kb on + strandat 2450.301 kb on + strandat 2450.305 kb on + strandat 2450.306 kb on - strandat 2450.770 kb on + strand, within IAI46_11615at 2450.893 kb on + strand, within IAI46_11615at 2450.894 kb on - strand, within IAI46_11615at 2450.896 kb on + strand, within IAI46_11615at 2450.897 kb on - strand, within IAI46_11615at 2450.961 kb on + strand, within IAI46_11615at 2450.962 kb on - strand, within IAI46_11615at 2450.962 kb on - strand, within IAI46_11615at 2451.055 kb on + strand, within IAI46_11615at 2451.055 kb on + strand, within IAI46_11615at 2451.055 kb on + strand, within IAI46_11615at 2451.056 kb on - strand, within IAI46_11615at 2451.056 kb on - strand, within IAI46_11615at 2451.057 kb on + strand, within IAI46_11615at 2451.058 kb on - strand, within IAI46_11615at 2451.106 kb on - strand, within IAI46_11615at 2451.314 kb on - strand, within IAI46_11615at 2451.314 kb on - strand, within IAI46_11615at 2451.314 kb on - strand, within IAI46_11615at 2451.473 kb on + strandat 2451.474 kb on - strandat 2451.553 kb on + strandat 2451.554 kb on - strandat 2451.627 kb on + strandat 2451.689 kb on - strandat 2451.776 kb on - strand, within IAI46_11620at 2451.817 kb on - strand, within IAI46_11620at 2451.817 kb on - strand, within IAI46_11620at 2451.895 kb on + strand, within IAI46_11620at 2451.982 kb on - strand, within IAI46_11620at 2452.036 kb on - strand, within IAI46_11620at 2452.083 kb on + strand, within IAI46_11620at 2452.084 kb on - strand, within IAI46_11620at 2452.118 kb on + strand, within IAI46_11620at 2452.415 kb on - strand, within IAI46_11620at 2452.415 kb on - strand, within IAI46_11620at 2452.469 kb on - strand, within IAI46_11620at 2452.509 kb on - strand, within IAI46_11620at 2452.538 kb on - strand, within IAI46_11620at 2452.548 kb on - strand, within IAI46_11620at 2452.548 kb on - strand, within IAI46_11620at 2452.555 kb on + strand, within IAI46_11620at 2452.556 kb on - strand, within IAI46_11620

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,449,464 - IAI46_11610 0.11 +0.6
2,449,695 - IAI46_11610 0.37 +0.4
2,449,700 - IAI46_11610 0.38 +1.5
2,449,774 - IAI46_11610 0.46 +1.0
2,449,774 - IAI46_11610 0.46 -2.1
2,449,774 - IAI46_11610 0.46 +1.0
2,449,855 - IAI46_11610 0.55 -0.1
2,449,941 + IAI46_11610 0.65 +0.1
2,450,286 + +1.5
2,450,301 + -0.0
2,450,301 + +0.3
2,450,305 + -0.2
2,450,306 - -0.2
2,450,770 + IAI46_11615 0.28 +0.0
2,450,893 + IAI46_11615 0.39 +0.1
2,450,894 - IAI46_11615 0.39 +1.8
2,450,896 + IAI46_11615 0.39 +0.4
2,450,897 - IAI46_11615 0.39 +0.8
2,450,961 + IAI46_11615 0.45 -1.2
2,450,962 - IAI46_11615 0.45 +0.3
2,450,962 - IAI46_11615 0.45 +0.6
2,451,055 + IAI46_11615 0.53 -0.1
2,451,055 + IAI46_11615 0.53 +0.4
2,451,055 + IAI46_11615 0.53 +0.5
2,451,056 - IAI46_11615 0.53 -1.0
2,451,056 - IAI46_11615 0.53 +0.6
2,451,057 + IAI46_11615 0.53 -0.4
2,451,058 - IAI46_11615 0.54 -0.7
2,451,106 - IAI46_11615 0.58 +1.3
2,451,314 - IAI46_11615 0.76 +0.8
2,451,314 - IAI46_11615 0.76 +0.9
2,451,314 - IAI46_11615 0.76 +0.4
2,451,473 + +1.3
2,451,474 - -0.6
2,451,553 + +0.2
2,451,554 - -0.1
2,451,627 + +0.3
2,451,689 - +0.8
2,451,776 - IAI46_11620 0.13 -0.2
2,451,817 - IAI46_11620 0.16 +0.3
2,451,817 - IAI46_11620 0.16 +0.3
2,451,895 + IAI46_11620 0.23 +1.3
2,451,982 - IAI46_11620 0.30 -0.3
2,452,036 - IAI46_11620 0.35 -0.1
2,452,083 + IAI46_11620 0.39 +0.7
2,452,084 - IAI46_11620 0.39 -0.1
2,452,118 + IAI46_11620 0.42 +0.1
2,452,415 - IAI46_11620 0.68 -1.1
2,452,415 - IAI46_11620 0.68 -0.6
2,452,469 - IAI46_11620 0.73 +0.4
2,452,509 - IAI46_11620 0.76 +0.1
2,452,538 - IAI46_11620 0.79 +1.3
2,452,548 - IAI46_11620 0.79 +2.0
2,452,548 - IAI46_11620 0.79 +0.5
2,452,555 + IAI46_11620 0.80 +0.1
2,452,556 - IAI46_11620 0.80 +0.3

Or see this region's nucleotide sequence