Strain Fitness in Serratia liquefaciens MT49 around IAI46_11350

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11340 and IAI46_11345 are separated by 86 nucleotidesIAI46_11345 and IAI46_11350 are separated by 369 nucleotidesIAI46_11350 and IAI46_11355 are separated by 45 nucleotidesIAI46_11355 and IAI46_11360 are separated by 87 nucleotides IAI46_11340: IAI46_11340 - transcriptional regulator SlyA, at 2,392,559 to 2,392,993 _11340 IAI46_11345: IAI46_11345 - glycine zipper 2TM domain-containing protein, at 2,393,080 to 2,393,544 _11345 IAI46_11350: IAI46_11350 - anhydro-N-acetylmuramic acid kinase, at 2,393,914 to 2,395,035 _11350 IAI46_11355: IAI46_11355 - MliC family protein, at 2,395,081 to 2,395,383 _11355 IAI46_11360: IAI46_11360 - pyridoxamine 5'-phosphate oxidase, at 2,395,471 to 2,396,124 _11360 Position (kb) 2393 2394 2395 2396Strain fitness (log2 ratio) -2 -1 0 1at 2392.915 kb on + strand, within IAI46_11340at 2392.915 kb on + strand, within IAI46_11340at 2392.984 kb on + strandat 2392.985 kb on - strandat 2393.074 kb on + strandat 2393.082 kb on - strandat 2393.122 kb on - strandat 2393.368 kb on - strand, within IAI46_11345at 2393.368 kb on - strand, within IAI46_11345at 2393.506 kb on - strandat 2393.561 kb on + strandat 2393.565 kb on - strandat 2393.612 kb on + strandat 2393.622 kb on - strandat 2393.639 kb on - strandat 2393.639 kb on - strandat 2393.670 kb on + strandat 2393.708 kb on - strandat 2393.863 kb on + strandat 2393.914 kb on - strandat 2393.914 kb on - strandat 2393.929 kb on + strandat 2393.931 kb on + strandat 2393.931 kb on + strandat 2393.931 kb on + strandat 2393.932 kb on - strandat 2393.932 kb on - strandat 2393.933 kb on + strandat 2393.933 kb on + strandat 2393.933 kb on + strandat 2393.933 kb on + strandat 2393.933 kb on + strandat 2393.933 kb on + strandat 2393.934 kb on - strandat 2393.934 kb on - strandat 2393.934 kb on - strandat 2393.934 kb on - strandat 2393.940 kb on + strandat 2393.940 kb on + strandat 2393.940 kb on + strandat 2393.940 kb on + strandat 2394.020 kb on - strandat 2394.063 kb on + strand, within IAI46_11350at 2394.215 kb on + strand, within IAI46_11350at 2394.249 kb on + strand, within IAI46_11350at 2394.325 kb on - strand, within IAI46_11350at 2394.325 kb on - strand, within IAI46_11350at 2394.538 kb on - strand, within IAI46_11350at 2394.646 kb on + strand, within IAI46_11350at 2394.710 kb on + strand, within IAI46_11350at 2394.843 kb on - strand, within IAI46_11350at 2394.933 kb on + strandat 2395.042 kb on + strandat 2395.043 kb on - strandat 2395.133 kb on - strand, within IAI46_11355at 2395.285 kb on + strand, within IAI46_11355at 2395.300 kb on + strand, within IAI46_11355at 2395.301 kb on - strand, within IAI46_11355at 2395.301 kb on - strand, within IAI46_11355at 2395.341 kb on + strand, within IAI46_11355at 2395.342 kb on - strand, within IAI46_11355

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,392,915 + IAI46_11340 0.82 -1.7
2,392,915 + IAI46_11340 0.82 +1.2
2,392,984 + +0.1
2,392,985 - -1.0
2,393,074 + -0.0
2,393,082 - +0.9
2,393,122 - +0.8
2,393,368 - IAI46_11345 0.62 -1.9
2,393,368 - IAI46_11345 0.62 +1.0
2,393,506 - +0.6
2,393,561 + +0.4
2,393,565 - -0.2
2,393,612 + -0.4
2,393,622 - -0.5
2,393,639 - +0.4
2,393,639 - -2.0
2,393,670 + -1.1
2,393,708 - -0.2
2,393,863 + +0.4
2,393,914 - +0.3
2,393,914 - -0.6
2,393,929 + +0.4
2,393,931 + +0.7
2,393,931 + -0.0
2,393,931 + +0.1
2,393,932 - +0.1
2,393,932 - -0.7
2,393,933 + -0.1
2,393,933 + +0.3
2,393,933 + -0.3
2,393,933 + +0.4
2,393,933 + +0.1
2,393,933 + -0.4
2,393,934 - +0.3
2,393,934 - -0.1
2,393,934 - +0.7
2,393,934 - +0.1
2,393,940 + -0.2
2,393,940 + +0.6
2,393,940 + +0.1
2,393,940 + -0.1
2,394,020 - +0.7
2,394,063 + IAI46_11350 0.13 +0.7
2,394,215 + IAI46_11350 0.27 -0.1
2,394,249 + IAI46_11350 0.30 +0.8
2,394,325 - IAI46_11350 0.37 -0.8
2,394,325 - IAI46_11350 0.37 +0.0
2,394,538 - IAI46_11350 0.56 +0.6
2,394,646 + IAI46_11350 0.65 -0.4
2,394,710 + IAI46_11350 0.71 -0.2
2,394,843 - IAI46_11350 0.83 -0.9
2,394,933 + -0.3
2,395,042 + +0.9
2,395,043 - +0.4
2,395,133 - IAI46_11355 0.17 +0.2
2,395,285 + IAI46_11355 0.67 +0.4
2,395,300 + IAI46_11355 0.72 -1.1
2,395,301 - IAI46_11355 0.73 -0.4
2,395,301 - IAI46_11355 0.73 +0.0
2,395,341 + IAI46_11355 0.86 +0.7
2,395,342 - IAI46_11355 0.86 +0.2

Or see this region's nucleotide sequence