Strain Fitness in Serratia liquefaciens MT49 around IAI46_10595

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_10590 and IAI46_10595 are separated by 111 nucleotidesIAI46_10595 and IAI46_10600 are separated by 12 nucleotides IAI46_10590: IAI46_10590 - hypothetical protein, at 2,236,839 to 2,237,312 _10590 IAI46_10595: IAI46_10595 - chorismate mutase, at 2,237,424 to 2,237,954 _10595 IAI46_10600: IAI46_10600 - beta-lactamase family protein, at 2,237,967 to 2,239,502 _10600 Position (kb) 2237 2238Strain fitness (log2 ratio) -2 -1 0 1at 2236.457 kb on - strandat 2236.457 kb on - strandat 2236.556 kb on + strandat 2236.556 kb on + strandat 2236.747 kb on + strandat 2236.747 kb on + strandat 2236.748 kb on - strandat 2236.758 kb on + strandat 2236.802 kb on + strandat 2236.813 kb on + strandat 2236.814 kb on - strandat 2236.814 kb on - strandat 2236.854 kb on - strandat 2236.867 kb on + strandat 2236.958 kb on + strand, within IAI46_10590at 2236.959 kb on - strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2236.976 kb on + strand, within IAI46_10590at 2237.019 kb on - strand, within IAI46_10590at 2237.089 kb on - strand, within IAI46_10590at 2237.525 kb on + strand, within IAI46_10595at 2237.526 kb on - strand, within IAI46_10595at 2237.526 kb on - strand, within IAI46_10595at 2237.526 kb on - strand, within IAI46_10595at 2237.660 kb on + strand, within IAI46_10595at 2237.661 kb on - strand, within IAI46_10595at 2237.870 kb on + strand, within IAI46_10595at 2238.030 kb on + strandat 2238.037 kb on + strandat 2238.326 kb on + strand, within IAI46_10600at 2238.327 kb on - strand, within IAI46_10600at 2238.446 kb on - strand, within IAI46_10600at 2238.729 kb on + strand, within IAI46_10600at 2238.899 kb on - strand, within IAI46_10600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
2,236,457 - +0.1
2,236,457 - +0.2
2,236,556 + +0.4
2,236,556 + -1.4
2,236,747 + -0.7
2,236,747 + +0.2
2,236,748 - +0.5
2,236,758 + -0.9
2,236,802 + +0.1
2,236,813 + +0.5
2,236,814 - -0.8
2,236,814 - -1.2
2,236,854 - +0.2
2,236,867 + +0.4
2,236,958 + IAI46_10590 0.25 -0.8
2,236,959 - IAI46_10590 0.25 +0.6
2,236,976 + IAI46_10590 0.29 -0.2
2,236,976 + IAI46_10590 0.29 -0.8
2,236,976 + IAI46_10590 0.29 -0.3
2,237,019 - IAI46_10590 0.38 -0.8
2,237,089 - IAI46_10590 0.53 +0.0
2,237,525 + IAI46_10595 0.19 +0.0
2,237,526 - IAI46_10595 0.19 -0.3
2,237,526 - IAI46_10595 0.19 -0.4
2,237,526 - IAI46_10595 0.19 -0.1
2,237,660 + IAI46_10595 0.44 +0.8
2,237,661 - IAI46_10595 0.45 -2.2
2,237,870 + IAI46_10595 0.84 -0.7
2,238,030 + +0.8
2,238,037 + +0.5
2,238,326 + IAI46_10600 0.23 +0.3
2,238,327 - IAI46_10600 0.23 +0.0
2,238,446 - IAI46_10600 0.31 +0.3
2,238,729 + IAI46_10600 0.50 -0.5
2,238,899 - IAI46_10600 0.61 -0.5

Or see this region's nucleotide sequence