Strain Fitness in Serratia liquefaciens MT49 around IAI46_09910

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09900 and IAI46_09905 are separated by 72 nucleotidesIAI46_09905 and IAI46_09910 are separated by 332 nucleotidesIAI46_09910 and IAI46_09915 are separated by 358 nucleotides IAI46_09900: IAI46_09900 - beta-N-acetylhexosaminidase, at 2,092,293 to 2,093,312 _09900 IAI46_09905: IAI46_09905 - alpha/beta hydrolase, at 2,093,385 to 2,093,927 _09905 IAI46_09910: IAI46_09910 - NAD(P)/FAD-dependent oxidoreductase, at 2,094,260 to 2,095,564 _09910 IAI46_09915: IAI46_09915 - glycine zipper 2TM domain-containing protein, at 2,095,923 to 2,096,459 _09915 Position (kb) 2094 2095 2096Strain fitness (log2 ratio) -2 -1 0 1at 2093.327 kb on - strandat 2093.327 kb on - strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.390 kb on + strandat 2093.391 kb on - strandat 2093.391 kb on - strandat 2093.391 kb on - strandat 2093.395 kb on - strandat 2093.395 kb on - strandat 2093.399 kb on - strandat 2093.444 kb on - strand, within IAI46_09905at 2093.484 kb on + strand, within IAI46_09905at 2093.484 kb on + strand, within IAI46_09905at 2093.484 kb on + strand, within IAI46_09905at 2093.485 kb on - strand, within IAI46_09905at 2093.612 kb on + strand, within IAI46_09905at 2093.613 kb on - strand, within IAI46_09905at 2093.675 kb on + strand, within IAI46_09905at 2093.675 kb on + strand, within IAI46_09905at 2093.675 kb on + strand, within IAI46_09905at 2093.676 kb on - strand, within IAI46_09905at 2093.706 kb on + strand, within IAI46_09905at 2093.706 kb on + strand, within IAI46_09905at 2093.832 kb on + strand, within IAI46_09905at 2093.833 kb on - strand, within IAI46_09905at 2093.835 kb on + strand, within IAI46_09905at 2093.900 kb on + strandat 2093.901 kb on - strandat 2093.901 kb on - strandat 2094.056 kb on + strandat 2094.117 kb on + strandat 2094.134 kb on + strandat 2094.134 kb on + strandat 2094.169 kb on + strandat 2094.194 kb on + strandat 2094.195 kb on - strandat 2094.355 kb on + strandat 2094.356 kb on - strandat 2094.461 kb on + strand, within IAI46_09910at 2094.462 kb on - strand, within IAI46_09910at 2094.602 kb on + strand, within IAI46_09910at 2094.673 kb on + strand, within IAI46_09910at 2094.674 kb on - strand, within IAI46_09910at 2094.829 kb on + strand, within IAI46_09910at 2094.830 kb on - strand, within IAI46_09910at 2094.916 kb on + strand, within IAI46_09910at 2094.916 kb on + strand, within IAI46_09910at 2095.033 kb on + strand, within IAI46_09910at 2095.033 kb on + strand, within IAI46_09910at 2095.152 kb on + strand, within IAI46_09910at 2095.328 kb on + strand, within IAI46_09910at 2095.334 kb on + strand, within IAI46_09910at 2095.334 kb on + strand, within IAI46_09910at 2095.334 kb on + strand, within IAI46_09910at 2095.337 kb on - strand, within IAI46_09910at 2095.448 kb on + strandat 2095.448 kb on + strandat 2095.460 kb on + strandat 2095.461 kb on - strandat 2095.465 kb on + strandat 2095.465 kb on + strandat 2095.466 kb on - strandat 2095.466 kb on - strandat 2095.490 kb on + strandat 2095.491 kb on - strandat 2095.614 kb on - strandat 2095.620 kb on - strandat 2095.682 kb on - strandat 2095.716 kb on - strandat 2095.876 kb on - strandat 2095.958 kb on + strandat 2096.309 kb on + strand, within IAI46_09915at 2096.358 kb on + strand, within IAI46_09915at 2096.494 kb on - strandat 2096.494 kb on - strandat 2096.530 kb on + strandat 2096.534 kb on - strandat 2096.554 kb on - strandat 2096.558 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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2,093,327 - +0.2
2,093,327 - +1.0
2,093,390 + -0.2
2,093,390 + +0.1
2,093,390 + +0.3
2,093,390 + +0.9
2,093,390 + -0.3
2,093,390 + +0.3
2,093,391 - +0.4
2,093,391 - +0.9
2,093,391 - -0.2
2,093,395 - -0.9
2,093,395 - +1.0
2,093,399 - +1.4
2,093,444 - IAI46_09905 0.11 +0.2
2,093,484 + IAI46_09905 0.18 -0.2
2,093,484 + IAI46_09905 0.18 +0.0
2,093,484 + IAI46_09905 0.18 +0.5
2,093,485 - IAI46_09905 0.18 +0.5
2,093,612 + IAI46_09905 0.42 -0.1
2,093,613 - IAI46_09905 0.42 +0.1
2,093,675 + IAI46_09905 0.53 +0.1
2,093,675 + IAI46_09905 0.53 -0.6
2,093,675 + IAI46_09905 0.53 +0.4
2,093,676 - IAI46_09905 0.54 -0.6
2,093,706 + IAI46_09905 0.59 +0.2
2,093,706 + IAI46_09905 0.59 -1.4
2,093,832 + IAI46_09905 0.82 -0.6
2,093,833 - IAI46_09905 0.83 +1.4
2,093,835 + IAI46_09905 0.83 +0.3
2,093,900 + -0.0
2,093,901 - -0.5
2,093,901 - -0.0
2,094,056 + +0.7
2,094,117 + -1.0
2,094,134 + +1.7
2,094,134 + -0.1
2,094,169 + +0.2
2,094,194 + -0.6
2,094,195 - -0.1
2,094,355 + +1.1
2,094,356 - +0.1
2,094,461 + IAI46_09910 0.15 -0.4
2,094,462 - IAI46_09910 0.15 -0.4
2,094,602 + IAI46_09910 0.26 -2.5
2,094,673 + IAI46_09910 0.32 +0.2
2,094,674 - IAI46_09910 0.32 -0.9
2,094,829 + IAI46_09910 0.44 +0.7
2,094,830 - IAI46_09910 0.44 +0.4
2,094,916 + IAI46_09910 0.50 +0.1
2,094,916 + IAI46_09910 0.50 +0.1
2,095,033 + IAI46_09910 0.59 -0.9
2,095,033 + IAI46_09910 0.59 +0.6
2,095,152 + IAI46_09910 0.68 -1.3
2,095,328 + IAI46_09910 0.82 +0.7
2,095,334 + IAI46_09910 0.82 -0.3
2,095,334 + IAI46_09910 0.82 -0.5
2,095,334 + IAI46_09910 0.82 +0.7
2,095,337 - IAI46_09910 0.83 -0.1
2,095,448 + +0.5
2,095,448 + +0.8
2,095,460 + +1.4
2,095,461 - -0.8
2,095,465 + +1.0
2,095,465 + -0.9
2,095,466 - +0.6
2,095,466 - -0.6
2,095,490 + -0.5
2,095,491 - +0.1
2,095,614 - -0.5
2,095,620 - -0.4
2,095,682 - +0.4
2,095,716 - +0.6
2,095,876 - +0.0
2,095,958 + +0.7
2,096,309 + IAI46_09915 0.72 +1.2
2,096,358 + IAI46_09915 0.81 +1.5
2,096,494 - +0.5
2,096,494 - +0.2
2,096,530 + +1.3
2,096,534 - -0.0
2,096,554 - -1.2
2,096,558 - -0.4

Or see this region's nucleotide sequence