Strain Fitness in Serratia liquefaciens MT49 around IAI46_08870

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08865 and IAI46_08870 are separated by 209 nucleotidesIAI46_08870 and IAI46_08875 are separated by 102 nucleotides IAI46_08865: IAI46_08865 - Lon protease family protein, at 1,902,619 to 1,904,370 _08865 IAI46_08870: IAI46_08870 - macrodomain Ter protein MatP, at 1,904,580 to 1,905,038 _08870 IAI46_08875: IAI46_08875 - porin OmpA, at 1,905,141 to 1,906,217 _08875 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -1 0 1at 1903.771 kb on + strand, within IAI46_08865at 1903.771 kb on + strand, within IAI46_08865at 1903.772 kb on - strand, within IAI46_08865at 1903.772 kb on - strand, within IAI46_08865at 1903.936 kb on - strand, within IAI46_08865at 1904.102 kb on + strand, within IAI46_08865at 1904.103 kb on - strand, within IAI46_08865at 1904.103 kb on - strand, within IAI46_08865at 1904.171 kb on + strand, within IAI46_08865at 1904.309 kb on - strandat 1904.377 kb on - strandat 1904.410 kb on + strandat 1904.410 kb on + strandat 1904.432 kb on + strandat 1904.446 kb on + strandat 1904.446 kb on + strandat 1904.509 kb on + strandat 1904.540 kb on + strandat 1904.546 kb on + strandat 1904.660 kb on + strand, within IAI46_08870at 1904.661 kb on - strand, within IAI46_08870at 1904.661 kb on - strand, within IAI46_08870at 1904.762 kb on + strand, within IAI46_08870at 1904.826 kb on - strand, within IAI46_08870at 1904.843 kb on + strand, within IAI46_08870at 1904.973 kb on + strand, within IAI46_08870at 1904.973 kb on + strand, within IAI46_08870at 1905.007 kb on + strandat 1905.008 kb on - strandat 1905.036 kb on + strandat 1905.113 kb on - strandat 1905.160 kb on - strandat 1905.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,903,771 + IAI46_08865 0.66 -0.7
1,903,771 + IAI46_08865 0.66 -0.3
1,903,772 - IAI46_08865 0.66 -1.7
1,903,772 - IAI46_08865 0.66 +0.8
1,903,936 - IAI46_08865 0.75 +0.1
1,904,102 + IAI46_08865 0.85 +0.6
1,904,103 - IAI46_08865 0.85 -0.4
1,904,103 - IAI46_08865 0.85 +1.2
1,904,171 + IAI46_08865 0.89 -0.1
1,904,309 - -0.7
1,904,377 - +1.3
1,904,410 + -1.5
1,904,410 + +0.1
1,904,432 + -0.3
1,904,446 + +0.1
1,904,446 + +0.9
1,904,509 + -0.8
1,904,540 + +1.2
1,904,546 + +0.6
1,904,660 + IAI46_08870 0.17 -0.4
1,904,661 - IAI46_08870 0.18 +0.4
1,904,661 - IAI46_08870 0.18 +1.3
1,904,762 + IAI46_08870 0.40 +0.0
1,904,826 - IAI46_08870 0.54 +0.2
1,904,843 + IAI46_08870 0.57 +0.6
1,904,973 + IAI46_08870 0.86 +0.9
1,904,973 + IAI46_08870 0.86 +1.0
1,905,007 + +0.8
1,905,008 - -0.8
1,905,036 + +0.5
1,905,113 - -0.1
1,905,160 - -0.3
1,905,174 - -0.6

Or see this region's nucleotide sequence