Strain Fitness in Serratia liquefaciens MT49 around IAI46_07125

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07115 and IAI46_07120 are separated by 41 nucleotidesIAI46_07120 and IAI46_07125 are separated by 81 nucleotidesIAI46_07125 and IAI46_07130 are separated by 129 nucleotides IAI46_07115: IAI46_07115 - cysteine hydrolase, at 1,501,964 to 1,502,491 _07115 IAI46_07120: IAI46_07120 - NAD(P)-dependent oxidoreductase, at 1,502,533 to 1,503,408 _07120 IAI46_07125: IAI46_07125 - SDR family oxidoreductase, at 1,503,490 to 1,504,236 _07125 IAI46_07130: IAI46_07130 - LysR family transcriptional regulator, at 1,504,366 to 1,505,301 _07130 Position (kb) 1503 1504 1505Strain fitness (log2 ratio) -1 0 1at 1502.525 kb on + strandat 1502.526 kb on - strandat 1502.534 kb on + strandat 1502.535 kb on - strandat 1502.629 kb on + strand, within IAI46_07120at 1502.630 kb on - strand, within IAI46_07120at 1502.678 kb on - strand, within IAI46_07120at 1502.710 kb on + strand, within IAI46_07120at 1502.768 kb on + strand, within IAI46_07120at 1502.768 kb on + strand, within IAI46_07120at 1502.768 kb on + strand, within IAI46_07120at 1502.769 kb on - strand, within IAI46_07120at 1502.831 kb on + strand, within IAI46_07120at 1502.905 kb on - strand, within IAI46_07120at 1503.015 kb on + strand, within IAI46_07120at 1503.069 kb on + strand, within IAI46_07120at 1503.069 kb on + strand, within IAI46_07120at 1503.071 kb on + strand, within IAI46_07120at 1503.072 kb on - strand, within IAI46_07120at 1503.072 kb on - strand, within IAI46_07120at 1503.095 kb on - strand, within IAI46_07120at 1503.235 kb on + strand, within IAI46_07120at 1503.235 kb on + strand, within IAI46_07120at 1503.235 kb on + strand, within IAI46_07120at 1503.236 kb on - strand, within IAI46_07120at 1503.236 kb on - strand, within IAI46_07120at 1503.332 kb on - strandat 1503.431 kb on - strandat 1503.480 kb on + strandat 1503.481 kb on - strandat 1504.154 kb on + strand, within IAI46_07125at 1504.224 kb on + strandat 1504.224 kb on + strandat 1504.225 kb on - strandat 1504.318 kb on + strandat 1504.327 kb on + strandat 1504.332 kb on + strandat 1504.333 kb on - strandat 1504.333 kb on - strandat 1504.336 kb on + strandat 1504.336 kb on + strandat 1504.377 kb on - strandat 1505.161 kb on - strand, within IAI46_07130at 1505.175 kb on + strand, within IAI46_07130at 1505.175 kb on + strand, within IAI46_07130at 1505.175 kb on + strand, within IAI46_07130at 1505.175 kb on + strand, within IAI46_07130at 1505.175 kb on + strand, within IAI46_07130at 1505.175 kb on + strand, within IAI46_07130at 1505.192 kb on + strand, within IAI46_07130

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,502,525 + -0.1
1,502,526 - +0.2
1,502,534 + +0.2
1,502,535 - +0.6
1,502,629 + IAI46_07120 0.11 -0.2
1,502,630 - IAI46_07120 0.11 -0.6
1,502,678 - IAI46_07120 0.17 +0.3
1,502,710 + IAI46_07120 0.20 -0.2
1,502,768 + IAI46_07120 0.27 -0.2
1,502,768 + IAI46_07120 0.27 +0.8
1,502,768 + IAI46_07120 0.27 +0.1
1,502,769 - IAI46_07120 0.27 -0.0
1,502,831 + IAI46_07120 0.34 +0.7
1,502,905 - IAI46_07120 0.42 +1.5
1,503,015 + IAI46_07120 0.55 +0.1
1,503,069 + IAI46_07120 0.61 +1.1
1,503,069 + IAI46_07120 0.61 +0.3
1,503,071 + IAI46_07120 0.61 -0.1
1,503,072 - IAI46_07120 0.62 +0.8
1,503,072 - IAI46_07120 0.62 -0.4
1,503,095 - IAI46_07120 0.64 -1.5
1,503,235 + IAI46_07120 0.80 +0.1
1,503,235 + IAI46_07120 0.80 +0.4
1,503,235 + IAI46_07120 0.80 -0.0
1,503,236 - IAI46_07120 0.80 +0.5
1,503,236 - IAI46_07120 0.80 -0.2
1,503,332 - +0.6
1,503,431 - -0.7
1,503,480 + +0.4
1,503,481 - -0.6
1,504,154 + IAI46_07125 0.89 -0.2
1,504,224 + +0.1
1,504,224 + -0.6
1,504,225 - +0.4
1,504,318 + +0.2
1,504,327 + +0.5
1,504,332 + +1.1
1,504,333 - +0.0
1,504,333 - +0.6
1,504,336 + -0.7
1,504,336 + -0.5
1,504,377 - -0.3
1,505,161 - IAI46_07130 0.85 +0.8
1,505,175 + IAI46_07130 0.86 -0.0
1,505,175 + IAI46_07130 0.86 -0.8
1,505,175 + IAI46_07130 0.86 +0.2
1,505,175 + IAI46_07130 0.86 +0.2
1,505,175 + IAI46_07130 0.86 +0.4
1,505,175 + IAI46_07130 0.86 -0.4
1,505,192 + IAI46_07130 0.88 +0.4

Or see this region's nucleotide sequence