Strain Fitness in Serratia liquefaciens MT49 around IAI46_06630

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06625 and IAI46_06630 are separated by 2 nucleotidesIAI46_06630 and IAI46_06635 are separated by 160 nucleotidesIAI46_06635 and IAI46_06640 are separated by 12 nucleotides IAI46_06625: IAI46_06625 - HlyD family secretion protein, at 1,411,408 to 1,412,436 _06625 IAI46_06630: IAI46_06630 - MFS transporter, at 1,412,439 to 1,414,043 _06630 IAI46_06635: IAI46_06635 - IclR family transcriptional regulator, at 1,414,204 to 1,414,983 _06635 IAI46_06640: IAI46_06640 - universal stress protein, at 1,414,996 to 1,415,445 _06640 Position (kb) 1412 1413 1414 1415Strain fitness (log2 ratio) -2 -1 0 1 2at 1411.521 kb on - strand, within IAI46_06625at 1411.580 kb on - strand, within IAI46_06625at 1411.624 kb on + strand, within IAI46_06625at 1411.625 kb on - strand, within IAI46_06625at 1411.625 kb on - strand, within IAI46_06625at 1411.694 kb on + strand, within IAI46_06625at 1411.694 kb on + strand, within IAI46_06625at 1411.694 kb on + strand, within IAI46_06625at 1411.694 kb on + strand, within IAI46_06625at 1411.694 kb on + strand, within IAI46_06625at 1411.694 kb on + strand, within IAI46_06625at 1411.694 kb on + strand, within IAI46_06625at 1411.695 kb on - strand, within IAI46_06625at 1411.695 kb on - strand, within IAI46_06625at 1411.806 kb on + strand, within IAI46_06625at 1411.806 kb on + strand, within IAI46_06625at 1411.806 kb on + strand, within IAI46_06625at 1411.808 kb on + strand, within IAI46_06625at 1411.857 kb on + strand, within IAI46_06625at 1412.012 kb on - strand, within IAI46_06625at 1412.048 kb on + strand, within IAI46_06625at 1412.048 kb on + strand, within IAI46_06625at 1412.049 kb on - strand, within IAI46_06625at 1412.131 kb on - strand, within IAI46_06625at 1412.219 kb on - strand, within IAI46_06625at 1412.251 kb on + strand, within IAI46_06625at 1412.301 kb on - strand, within IAI46_06625at 1412.358 kb on - strandat 1412.407 kb on + strandat 1412.408 kb on - strandat 1412.463 kb on + strandat 1412.464 kb on - strandat 1412.464 kb on - strandat 1412.464 kb on - strandat 1412.469 kb on + strandat 1412.544 kb on - strandat 1412.544 kb on - strandat 1412.554 kb on + strandat 1412.554 kb on + strandat 1412.592 kb on + strandat 1412.592 kb on + strandat 1412.593 kb on - strandat 1412.593 kb on - strandat 1412.705 kb on + strand, within IAI46_06630at 1412.813 kb on + strand, within IAI46_06630at 1412.955 kb on + strand, within IAI46_06630at 1413.063 kb on + strand, within IAI46_06630at 1413.063 kb on + strand, within IAI46_06630at 1413.069 kb on + strand, within IAI46_06630at 1413.142 kb on + strand, within IAI46_06630at 1413.143 kb on - strand, within IAI46_06630at 1413.177 kb on + strand, within IAI46_06630at 1413.178 kb on - strand, within IAI46_06630at 1413.183 kb on + strand, within IAI46_06630at 1413.206 kb on + strand, within IAI46_06630at 1413.263 kb on - strand, within IAI46_06630at 1413.263 kb on - strand, within IAI46_06630at 1413.429 kb on + strand, within IAI46_06630at 1413.444 kb on + strand, within IAI46_06630at 1413.444 kb on + strand, within IAI46_06630at 1413.503 kb on + strand, within IAI46_06630at 1413.598 kb on + strand, within IAI46_06630at 1413.613 kb on + strand, within IAI46_06630at 1413.733 kb on - strand, within IAI46_06630at 1413.854 kb on - strand, within IAI46_06630at 1414.043 kb on + strandat 1414.043 kb on + strandat 1414.044 kb on - strandat 1414.044 kb on - strandat 1414.044 kb on - strandat 1414.110 kb on - strandat 1414.127 kb on - strandat 1414.215 kb on + strandat 1414.215 kb on + strandat 1414.215 kb on + strandat 1414.216 kb on - strandat 1414.216 kb on - strandat 1414.216 kb on - strandat 1414.222 kb on + strandat 1414.222 kb on + strandat 1414.222 kb on + strandat 1414.222 kb on + strandat 1414.223 kb on - strandat 1414.260 kb on + strandat 1414.365 kb on + strand, within IAI46_06635at 1414.365 kb on + strand, within IAI46_06635at 1414.366 kb on - strand, within IAI46_06635at 1414.388 kb on + strand, within IAI46_06635at 1414.388 kb on + strand, within IAI46_06635at 1414.458 kb on - strand, within IAI46_06635at 1414.458 kb on - strand, within IAI46_06635at 1414.461 kb on + strand, within IAI46_06635at 1414.512 kb on + strand, within IAI46_06635at 1414.526 kb on + strand, within IAI46_06635at 1414.527 kb on - strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.630 kb on + strand, within IAI46_06635at 1414.705 kb on + strand, within IAI46_06635at 1414.790 kb on - strand, within IAI46_06635at 1414.845 kb on + strand, within IAI46_06635at 1414.846 kb on - strand, within IAI46_06635at 1415.040 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,411,521 - IAI46_06625 0.11 -0.4
1,411,580 - IAI46_06625 0.17 +0.2
1,411,624 + IAI46_06625 0.21 +0.5
1,411,625 - IAI46_06625 0.21 +0.2
1,411,625 - IAI46_06625 0.21 -0.3
1,411,694 + IAI46_06625 0.28 -0.3
1,411,694 + IAI46_06625 0.28 +0.7
1,411,694 + IAI46_06625 0.28 -0.9
1,411,694 + IAI46_06625 0.28 -0.9
1,411,694 + IAI46_06625 0.28 -0.0
1,411,694 + IAI46_06625 0.28 -0.1
1,411,694 + IAI46_06625 0.28 +0.3
1,411,695 - IAI46_06625 0.28 -0.6
1,411,695 - IAI46_06625 0.28 +0.2
1,411,806 + IAI46_06625 0.39 +1.5
1,411,806 + IAI46_06625 0.39 -0.6
1,411,806 + IAI46_06625 0.39 -0.4
1,411,808 + IAI46_06625 0.39 +0.3
1,411,857 + IAI46_06625 0.44 -1.2
1,412,012 - IAI46_06625 0.59 +0.5
1,412,048 + IAI46_06625 0.62 -0.1
1,412,048 + IAI46_06625 0.62 -0.5
1,412,049 - IAI46_06625 0.62 -1.1
1,412,131 - IAI46_06625 0.70 -1.1
1,412,219 - IAI46_06625 0.79 +0.1
1,412,251 + IAI46_06625 0.82 +0.2
1,412,301 - IAI46_06625 0.87 -0.5
1,412,358 - +0.1
1,412,407 + +0.3
1,412,408 - -0.1
1,412,463 + -0.6
1,412,464 - +0.8
1,412,464 - +0.3
1,412,464 - +0.9
1,412,469 + +0.9
1,412,544 - -0.1
1,412,544 - -0.6
1,412,554 + +1.1
1,412,554 + -0.2
1,412,592 + -0.5
1,412,592 + -0.1
1,412,593 - +0.4
1,412,593 - -0.3
1,412,705 + IAI46_06630 0.17 -0.4
1,412,813 + IAI46_06630 0.23 +0.7
1,412,955 + IAI46_06630 0.32 -0.2
1,413,063 + IAI46_06630 0.39 -0.0
1,413,063 + IAI46_06630 0.39 -0.1
1,413,069 + IAI46_06630 0.39 +0.1
1,413,142 + IAI46_06630 0.44 +0.2
1,413,143 - IAI46_06630 0.44 -0.2
1,413,177 + IAI46_06630 0.46 -0.1
1,413,178 - IAI46_06630 0.46 +1.9
1,413,183 + IAI46_06630 0.46 -0.5
1,413,206 + IAI46_06630 0.48 -0.9
1,413,263 - IAI46_06630 0.51 +0.2
1,413,263 - IAI46_06630 0.51 -0.4
1,413,429 + IAI46_06630 0.62 -0.2
1,413,444 + IAI46_06630 0.63 +0.5
1,413,444 + IAI46_06630 0.63 +0.2
1,413,503 + IAI46_06630 0.66 +1.2
1,413,598 + IAI46_06630 0.72 -0.1
1,413,613 + IAI46_06630 0.73 -0.1
1,413,733 - IAI46_06630 0.81 +0.9
1,413,854 - IAI46_06630 0.88 +1.0
1,414,043 + +0.1
1,414,043 + +0.5
1,414,044 - -0.6
1,414,044 - +0.9
1,414,044 - +0.2
1,414,110 - +0.5
1,414,127 - -0.4
1,414,215 + -1.4
1,414,215 + +0.6
1,414,215 + -0.2
1,414,216 - -0.1
1,414,216 - +0.1
1,414,216 - -1.2
1,414,222 + +1.7
1,414,222 + +0.7
1,414,222 + +0.2
1,414,222 + +0.6
1,414,223 - +0.9
1,414,260 + +1.0
1,414,365 + IAI46_06635 0.21 -0.7
1,414,365 + IAI46_06635 0.21 -0.1
1,414,366 - IAI46_06635 0.21 -1.0
1,414,388 + IAI46_06635 0.24 +0.7
1,414,388 + IAI46_06635 0.24 +0.7
1,414,458 - IAI46_06635 0.33 +0.5
1,414,458 - IAI46_06635 0.33 -2.0
1,414,461 + IAI46_06635 0.33 +0.3
1,414,512 + IAI46_06635 0.39 +0.5
1,414,526 + IAI46_06635 0.41 +0.3
1,414,527 - IAI46_06635 0.41 -0.3
1,414,630 + IAI46_06635 0.55 +0.5
1,414,630 + IAI46_06635 0.55 +0.8
1,414,630 + IAI46_06635 0.55 +0.9
1,414,630 + IAI46_06635 0.55 +0.6
1,414,630 + IAI46_06635 0.55 -1.1
1,414,705 + IAI46_06635 0.64 +0.6
1,414,790 - IAI46_06635 0.75 +0.2
1,414,845 + IAI46_06635 0.82 +0.5
1,414,846 - IAI46_06635 0.82 -1.4
1,415,040 + -0.5

Or see this region's nucleotide sequence