Strain Fitness in Serratia liquefaciens MT49 around IAI46_06315

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06300 and IAI46_06305 are separated by 17 nucleotidesIAI46_06305 and IAI46_06310 overlap by 1 nucleotidesIAI46_06310 and IAI46_06315 are separated by 130 nucleotidesIAI46_06315 and IAI46_06320 overlap by 4 nucleotidesIAI46_06320 and IAI46_06325 are separated by 12 nucleotides IAI46_06300: IAI46_06300 - cytochrome d ubiquinol oxidase subunit II, at 1,351,027 to 1,352,166 _06300 IAI46_06305: IAI46_06305 - cytochrome bd-I oxidase subunit CydX, at 1,352,184 to 1,352,297 _06305 IAI46_06310: IAI46_06310 - cyd operon protein YbgE, at 1,352,297 to 1,352,593 _06310 IAI46_06315: IAI46_06315 - tol-pal system-associated acyl-CoA thioesterase, at 1,352,724 to 1,353,128 _06315 IAI46_06320: IAI46_06320 - Tol-Pal system protein TolQ, at 1,353,125 to 1,353,808 _06320 IAI46_06325: IAI46_06325 - colicin uptake protein TolR, at 1,353,821 to 1,354,249 _06325 Position (kb) 1352 1353 1354Strain fitness (log2 ratio) -2 -1 0 1at 1351.990 kb on - strand, within IAI46_06300at 1352.102 kb on - strandat 1352.104 kb on + strandat 1352.164 kb on + strandat 1352.165 kb on - strandat 1352.178 kb on + strandat 1352.178 kb on + strandat 1352.292 kb on - strandat 1352.311 kb on - strandat 1352.325 kb on - strandat 1352.579 kb on + strandat 1352.590 kb on - strandat 1352.603 kb on + strandat 1352.604 kb on - strandat 1352.633 kb on + strandat 1352.634 kb on - strandat 1352.656 kb on + strandat 1352.687 kb on - strandat 1352.688 kb on + strandat 1352.688 kb on + strandat 1352.688 kb on + strandat 1352.691 kb on + strandat 1352.691 kb on + strandat 1352.692 kb on - strandat 1352.700 kb on + strandat 1352.701 kb on - strandat 1352.720 kb on + strandat 1352.729 kb on + strandat 1352.732 kb on + strandat 1352.793 kb on + strand, within IAI46_06315at 1352.805 kb on + strand, within IAI46_06315at 1352.919 kb on + strand, within IAI46_06315at 1353.098 kb on + strandat 1353.098 kb on + strandat 1353.104 kb on + strandat 1353.104 kb on + strandat 1353.105 kb on - strandat 1353.119 kb on + strandat 1353.539 kb on + strand, within IAI46_06320at 1353.571 kb on + strand, within IAI46_06320at 1353.698 kb on + strand, within IAI46_06320at 1353.806 kb on + strandat 1353.810 kb on + strandat 1353.817 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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1,351,990 - IAI46_06300 0.84 -0.4
1,352,102 - +1.6
1,352,104 + +0.2
1,352,164 + +0.4
1,352,165 - +1.3
1,352,178 + +0.4
1,352,178 + +0.2
1,352,292 - +1.5
1,352,311 - -0.1
1,352,325 - -0.2
1,352,579 + -0.3
1,352,590 - -1.1
1,352,603 + +0.3
1,352,604 - +1.0
1,352,633 + -0.2
1,352,634 - +0.3
1,352,656 + +0.7
1,352,687 - -2.1
1,352,688 + +1.5
1,352,688 + +0.8
1,352,688 + +0.0
1,352,691 + -0.5
1,352,691 + +0.4
1,352,692 - +0.2
1,352,700 + -0.3
1,352,701 - -0.1
1,352,720 + +0.5
1,352,729 + +0.9
1,352,732 + +0.6
1,352,793 + IAI46_06315 0.17 +0.4
1,352,805 + IAI46_06315 0.20 +0.2
1,352,919 + IAI46_06315 0.48 +0.3
1,353,098 + -1.4
1,353,098 + -0.8
1,353,104 + -0.3
1,353,104 + -0.3
1,353,105 - -1.7
1,353,119 + -0.1
1,353,539 + IAI46_06320 0.61 -0.9
1,353,571 + IAI46_06320 0.65 -1.9
1,353,698 + IAI46_06320 0.84 -1.3
1,353,806 + -0.5
1,353,810 + -0.4
1,353,817 + +0.6

Or see this region's nucleotide sequence