Strain Fitness in Serratia liquefaciens MT49 around IAI46_04840

Experiment: No stress control, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_04835 and IAI46_04840 are separated by 72 nucleotidesIAI46_04840 and IAI46_04845 are separated by 33 nucleotidesIAI46_04845 and IAI46_04850 are separated by 25 nucleotides IAI46_04835: IAI46_04835 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 1,041,677 to 1,042,747 _04835 IAI46_04840: IAI46_04840 - tRNA guanosine(34) transglycosylase Tgt, at 1,042,820 to 1,043,944 _04840 IAI46_04845: IAI46_04845 - preprotein translocase subunit YajC, at 1,043,978 to 1,044,310 _04845 IAI46_04850: IAI46_04850 - protein translocase subunit SecD, at 1,044,336 to 1,046,183 _04850 Position (kb) 1042 1043 1044Strain fitness (log2 ratio) -3 -2 -1 0 1at 1041.979 kb on + strand, within IAI46_04835at 1041.979 kb on + strand, within IAI46_04835at 1041.979 kb on + strand, within IAI46_04835at 1041.980 kb on - strand, within IAI46_04835at 1042.048 kb on + strand, within IAI46_04835at 1042.130 kb on + strand, within IAI46_04835at 1042.130 kb on + strand, within IAI46_04835at 1042.130 kb on + strand, within IAI46_04835at 1042.130 kb on + strand, within IAI46_04835at 1042.130 kb on + strand, within IAI46_04835at 1042.130 kb on + strand, within IAI46_04835at 1042.131 kb on - strand, within IAI46_04835at 1042.131 kb on - strand, within IAI46_04835at 1042.133 kb on - strand, within IAI46_04835at 1042.169 kb on + strand, within IAI46_04835at 1042.181 kb on + strand, within IAI46_04835at 1042.181 kb on + strand, within IAI46_04835at 1042.182 kb on - strand, within IAI46_04835at 1042.361 kb on + strand, within IAI46_04835at 1042.395 kb on + strand, within IAI46_04835at 1042.396 kb on - strand, within IAI46_04835at 1042.396 kb on - strand, within IAI46_04835at 1042.396 kb on - strand, within IAI46_04835at 1042.405 kb on + strand, within IAI46_04835at 1042.405 kb on + strand, within IAI46_04835at 1042.406 kb on - strand, within IAI46_04835at 1042.492 kb on - strand, within IAI46_04835at 1042.525 kb on + strand, within IAI46_04835at 1042.525 kb on + strand, within IAI46_04835at 1042.526 kb on - strand, within IAI46_04835at 1042.526 kb on - strand, within IAI46_04835at 1042.526 kb on - strand, within IAI46_04835at 1042.526 kb on - strand, within IAI46_04835at 1042.544 kb on + strand, within IAI46_04835at 1042.600 kb on + strand, within IAI46_04835at 1042.647 kb on - strandat 1042.647 kb on - strandat 1042.686 kb on - strandat 1042.783 kb on - strandat 1042.841 kb on - strandat 1042.841 kb on - strandat 1042.906 kb on + strandat 1042.922 kb on + strandat 1042.932 kb on + strandat 1043.213 kb on + strand, within IAI46_04840at 1043.213 kb on + strand, within IAI46_04840at 1043.214 kb on - strand, within IAI46_04840at 1043.254 kb on + strand, within IAI46_04840at 1043.254 kb on + strand, within IAI46_04840at 1043.279 kb on + strand, within IAI46_04840at 1043.350 kb on + strand, within IAI46_04840at 1043.351 kb on - strand, within IAI46_04840at 1043.351 kb on - strand, within IAI46_04840at 1043.374 kb on + strand, within IAI46_04840at 1043.400 kb on + strand, within IAI46_04840at 1043.415 kb on + strand, within IAI46_04840at 1043.416 kb on - strand, within IAI46_04840at 1043.533 kb on + strand, within IAI46_04840at 1043.533 kb on + strand, within IAI46_04840at 1043.602 kb on + strand, within IAI46_04840at 1043.603 kb on - strand, within IAI46_04840at 1043.629 kb on + strand, within IAI46_04840at 1043.630 kb on - strand, within IAI46_04840at 1043.630 kb on - strand, within IAI46_04840at 1043.701 kb on + strand, within IAI46_04840at 1043.701 kb on + strand, within IAI46_04840at 1043.701 kb on + strand, within IAI46_04840at 1043.701 kb on + strand, within IAI46_04840at 1043.702 kb on - strand, within IAI46_04840at 1043.702 kb on - strand, within IAI46_04840at 1043.732 kb on + strand, within IAI46_04840at 1043.732 kb on + strand, within IAI46_04840at 1043.732 kb on + strand, within IAI46_04840at 1043.733 kb on - strand, within IAI46_04840at 1043.734 kb on + strand, within IAI46_04840at 1043.734 kb on + strand, within IAI46_04840at 1043.734 kb on + strand, within IAI46_04840at 1043.734 kb on + strand, within IAI46_04840at 1043.735 kb on - strand, within IAI46_04840at 1043.735 kb on - strand, within IAI46_04840at 1043.735 kb on - strand, within IAI46_04840at 1043.748 kb on - strand, within IAI46_04840at 1043.759 kb on + strand, within IAI46_04840at 1043.759 kb on + strand, within IAI46_04840at 1043.832 kb on - strandat 1043.962 kb on + strandat 1043.962 kb on + strandat 1044.052 kb on + strand, within IAI46_04845at 1044.052 kb on + strand, within IAI46_04845at 1044.052 kb on + strand, within IAI46_04845at 1044.115 kb on + strand, within IAI46_04845at 1044.308 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
remove
1,041,979 + IAI46_04835 0.28 -0.6
1,041,979 + IAI46_04835 0.28 -0.1
1,041,979 + IAI46_04835 0.28 -0.7
1,041,980 - IAI46_04835 0.28 +1.5
1,042,048 + IAI46_04835 0.35 +0.5
1,042,130 + IAI46_04835 0.42 +0.1
1,042,130 + IAI46_04835 0.42 -0.1
1,042,130 + IAI46_04835 0.42 -0.7
1,042,130 + IAI46_04835 0.42 -0.1
1,042,130 + IAI46_04835 0.42 +1.0
1,042,130 + IAI46_04835 0.42 +0.2
1,042,131 - IAI46_04835 0.42 +0.9
1,042,131 - IAI46_04835 0.42 +0.3
1,042,133 - IAI46_04835 0.43 -1.2
1,042,169 + IAI46_04835 0.46 +0.0
1,042,181 + IAI46_04835 0.47 -0.7
1,042,181 + IAI46_04835 0.47 -0.3
1,042,182 - IAI46_04835 0.47 +0.1
1,042,361 + IAI46_04835 0.64 +1.6
1,042,395 + IAI46_04835 0.67 +0.2
1,042,396 - IAI46_04835 0.67 -0.0
1,042,396 - IAI46_04835 0.67 +0.5
1,042,396 - IAI46_04835 0.67 -2.0
1,042,405 + IAI46_04835 0.68 +0.3
1,042,405 + IAI46_04835 0.68 +0.4
1,042,406 - IAI46_04835 0.68 -1.0
1,042,492 - IAI46_04835 0.76 +0.7
1,042,525 + IAI46_04835 0.79 +1.1
1,042,525 + IAI46_04835 0.79 -1.5
1,042,526 - IAI46_04835 0.79 -1.1
1,042,526 - IAI46_04835 0.79 -0.1
1,042,526 - IAI46_04835 0.79 +0.1
1,042,526 - IAI46_04835 0.79 +1.1
1,042,544 + IAI46_04835 0.81 -1.2
1,042,600 + IAI46_04835 0.86 +0.5
1,042,647 - -0.4
1,042,647 - -1.9
1,042,686 - -0.1
1,042,783 - +0.5
1,042,841 - +0.8
1,042,841 - -0.2
1,042,906 + -0.2
1,042,922 + -0.7
1,042,932 + -0.7
1,043,213 + IAI46_04840 0.35 -0.5
1,043,213 + IAI46_04840 0.35 -3.1
1,043,214 - IAI46_04840 0.35 -0.1
1,043,254 + IAI46_04840 0.39 +0.4
1,043,254 + IAI46_04840 0.39 -0.6
1,043,279 + IAI46_04840 0.41 -0.4
1,043,350 + IAI46_04840 0.47 -0.4
1,043,351 - IAI46_04840 0.47 -0.2
1,043,351 - IAI46_04840 0.47 -0.4
1,043,374 + IAI46_04840 0.49 -0.8
1,043,400 + IAI46_04840 0.52 +0.6
1,043,415 + IAI46_04840 0.53 -0.3
1,043,416 - IAI46_04840 0.53 +1.5
1,043,533 + IAI46_04840 0.63 -0.9
1,043,533 + IAI46_04840 0.63 +0.1
1,043,602 + IAI46_04840 0.70 -0.2
1,043,603 - IAI46_04840 0.70 -0.9
1,043,629 + IAI46_04840 0.72 +0.7
1,043,630 - IAI46_04840 0.72 -1.6
1,043,630 - IAI46_04840 0.72 +0.6
1,043,701 + IAI46_04840 0.78 -0.3
1,043,701 + IAI46_04840 0.78 +1.4
1,043,701 + IAI46_04840 0.78 +0.6
1,043,701 + IAI46_04840 0.78 +0.2
1,043,702 - IAI46_04840 0.78 -0.8
1,043,702 - IAI46_04840 0.78 -0.7
1,043,732 + IAI46_04840 0.81 +0.4
1,043,732 + IAI46_04840 0.81 +0.3
1,043,732 + IAI46_04840 0.81 -0.5
1,043,733 - IAI46_04840 0.81 +0.3
1,043,734 + IAI46_04840 0.81 -0.3
1,043,734 + IAI46_04840 0.81 +0.1
1,043,734 + IAI46_04840 0.81 -0.9
1,043,734 + IAI46_04840 0.81 -1.4
1,043,735 - IAI46_04840 0.81 +0.1
1,043,735 - IAI46_04840 0.81 +0.0
1,043,735 - IAI46_04840 0.81 -0.3
1,043,748 - IAI46_04840 0.82 -1.3
1,043,759 + IAI46_04840 0.83 +0.7
1,043,759 + IAI46_04840 0.83 -0.3
1,043,832 - +0.1
1,043,962 + -0.1
1,043,962 + -0.2
1,044,052 + IAI46_04845 0.22 -0.2
1,044,052 + IAI46_04845 0.22 +0.8
1,044,052 + IAI46_04845 0.22 +0.5
1,044,115 + IAI46_04845 0.41 -0.5
1,044,308 + -0.9

Or see this region's nucleotide sequence