Strain Fitness in Serratia liquefaciens MT49 around IAI46_04640

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04630 and IAI46_04635 overlap by 4 nucleotidesIAI46_04635 and IAI46_04640 are separated by 216 nucleotidesIAI46_04640 and IAI46_04645 overlap by 8 nucleotides IAI46_04630: IAI46_04630 - methyltransferase, at 993,521 to 994,078 _04630 IAI46_04635: IAI46_04635 - GNAT family N-acetyltransferase, at 994,075 to 994,539 _04635 IAI46_04640: IAI46_04640 - ABC transporter substrate-binding protein, at 994,756 to 995,871 _04640 IAI46_04645: IAI46_04645 - TonB-dependent siderophore receptor, at 995,864 to 997,993 _04645 Position (kb) 994 995 996Strain fitness (log2 ratio) -2 -1 0 1at 993.910 kb on + strand, within IAI46_04630at 993.971 kb on + strand, within IAI46_04630at 993.972 kb on - strand, within IAI46_04630at 994.004 kb on + strand, within IAI46_04630at 994.058 kb on + strandat 994.115 kb on + strandat 994.116 kb on - strandat 994.158 kb on - strand, within IAI46_04635at 994.158 kb on - strand, within IAI46_04635at 994.158 kb on - strand, within IAI46_04635at 994.173 kb on + strand, within IAI46_04635at 994.193 kb on - strand, within IAI46_04635at 994.282 kb on + strand, within IAI46_04635at 994.282 kb on + strand, within IAI46_04635at 994.283 kb on - strand, within IAI46_04635at 994.389 kb on - strand, within IAI46_04635at 994.389 kb on - strand, within IAI46_04635at 994.524 kb on + strandat 994.525 kb on - strandat 994.525 kb on - strandat 994.525 kb on - strandat 994.527 kb on + strandat 994.527 kb on + strandat 994.545 kb on + strandat 994.557 kb on + strandat 994.609 kb on + strandat 994.611 kb on + strandat 994.623 kb on + strandat 994.640 kb on + strandat 994.641 kb on - strandat 994.752 kb on - strandat 994.775 kb on + strandat 994.776 kb on - strandat 994.903 kb on + strand, within IAI46_04640at 994.903 kb on + strand, within IAI46_04640at 994.903 kb on + strand, within IAI46_04640at 994.903 kb on + strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.904 kb on - strand, within IAI46_04640at 994.944 kb on + strand, within IAI46_04640at 994.944 kb on + strand, within IAI46_04640at 994.945 kb on - strand, within IAI46_04640at 994.945 kb on - strand, within IAI46_04640at 994.999 kb on + strand, within IAI46_04640at 994.999 kb on + strand, within IAI46_04640at 995.000 kb on - strand, within IAI46_04640at 995.001 kb on + strand, within IAI46_04640at 995.002 kb on - strand, within IAI46_04640at 995.030 kb on + strand, within IAI46_04640at 995.037 kb on + strand, within IAI46_04640at 995.038 kb on - strand, within IAI46_04640at 995.185 kb on + strand, within IAI46_04640at 995.214 kb on + strand, within IAI46_04640at 995.214 kb on + strand, within IAI46_04640at 995.215 kb on - strand, within IAI46_04640at 995.281 kb on - strand, within IAI46_04640at 995.290 kb on + strand, within IAI46_04640at 995.301 kb on + strand, within IAI46_04640at 995.301 kb on + strand, within IAI46_04640at 995.301 kb on + strand, within IAI46_04640at 995.302 kb on - strand, within IAI46_04640at 995.302 kb on - strand, within IAI46_04640at 995.302 kb on - strand, within IAI46_04640at 995.302 kb on - strand, within IAI46_04640at 995.302 kb on - strand, within IAI46_04640at 995.302 kb on - strand, within IAI46_04640at 995.523 kb on + strand, within IAI46_04640at 995.523 kb on + strand, within IAI46_04640at 995.527 kb on + strand, within IAI46_04640at 995.528 kb on - strand, within IAI46_04640at 995.691 kb on + strand, within IAI46_04640at 995.691 kb on + strand, within IAI46_04640at 995.692 kb on - strand, within IAI46_04640at 995.692 kb on - strand, within IAI46_04640at 995.707 kb on + strand, within IAI46_04640at 995.708 kb on - strand, within IAI46_04640at 995.708 kb on - strand, within IAI46_04640at 995.719 kb on + strand, within IAI46_04640at 995.799 kb on + strandat 995.809 kb on + strandat 995.810 kb on - strandat 995.846 kb on - strandat 995.846 kb on - strandat 995.869 kb on + strandat 995.872 kb on + strandat 996.143 kb on + strand, within IAI46_04645at 996.143 kb on + strand, within IAI46_04645at 996.143 kb on + strand, within IAI46_04645at 996.143 kb on + strand, within IAI46_04645at 996.143 kb on + strand, within IAI46_04645at 996.143 kb on + strand, within IAI46_04645at 996.144 kb on - strand, within IAI46_04645at 996.144 kb on - strand, within IAI46_04645at 996.144 kb on - strand, within IAI46_04645at 996.516 kb on - strand, within IAI46_04645at 996.602 kb on + strand, within IAI46_04645at 996.610 kb on + strand, within IAI46_04645at 996.610 kb on + strand, within IAI46_04645at 996.610 kb on + strand, within IAI46_04645at 996.611 kb on - strand, within IAI46_04645at 996.611 kb on - strand, within IAI46_04645at 996.611 kb on - strand, within IAI46_04645at 996.611 kb on - strand, within IAI46_04645at 996.617 kb on + strand, within IAI46_04645at 996.618 kb on - strand, within IAI46_04645at 996.707 kb on + strand, within IAI46_04645at 996.707 kb on + strand, within IAI46_04645at 996.708 kb on - strand, within IAI46_04645at 996.709 kb on + strand, within IAI46_04645at 996.791 kb on + strand, within IAI46_04645at 996.791 kb on + strand, within IAI46_04645at 996.792 kb on - strand, within IAI46_04645at 996.792 kb on - strand, within IAI46_04645at 996.792 kb on - strand, within IAI46_04645at 996.792 kb on - strand, within IAI46_04645at 996.792 kb on - strand, within IAI46_04645at 996.797 kb on + strand, within IAI46_04645at 996.797 kb on + strand, within IAI46_04645at 996.798 kb on - strand, within IAI46_04645at 996.798 kb on - strand, within IAI46_04645at 996.799 kb on + strand, within IAI46_04645at 996.812 kb on + strand, within IAI46_04645at 996.813 kb on - strand, within IAI46_04645

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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993,910 + IAI46_04630 0.70 +0.3
993,971 + IAI46_04630 0.81 +1.1
993,972 - IAI46_04630 0.81 -0.6
994,004 + IAI46_04630 0.87 -0.6
994,058 + +0.6
994,115 + +0.0
994,116 - +0.2
994,158 - IAI46_04635 0.18 +0.0
994,158 - IAI46_04635 0.18 -0.6
994,158 - IAI46_04635 0.18 -0.4
994,173 + IAI46_04635 0.21 +1.1
994,193 - IAI46_04635 0.25 -0.9
994,282 + IAI46_04635 0.45 -0.7
994,282 + IAI46_04635 0.45 +0.1
994,283 - IAI46_04635 0.45 -0.6
994,389 - IAI46_04635 0.68 -0.5
994,389 - IAI46_04635 0.68 -0.3
994,524 + +0.7
994,525 - +0.2
994,525 - +0.5
994,525 - -0.3
994,527 + +0.4
994,527 + -0.4
994,545 + +0.1
994,557 + +0.3
994,609 + +0.4
994,611 + +0.6
994,623 + +0.2
994,640 + -0.1
994,641 - +0.1
994,752 - +0.5
994,775 + +0.2
994,776 - -0.9
994,903 + IAI46_04640 0.13 +0.1
994,903 + IAI46_04640 0.13 -0.9
994,903 + IAI46_04640 0.13 +0.8
994,903 + IAI46_04640 0.13 -0.8
994,904 - IAI46_04640 0.13 -0.4
994,904 - IAI46_04640 0.13 -0.1
994,904 - IAI46_04640 0.13 +0.6
994,904 - IAI46_04640 0.13 -0.2
994,904 - IAI46_04640 0.13 -0.6
994,904 - IAI46_04640 0.13 -0.2
994,944 + IAI46_04640 0.17 +0.5
994,944 + IAI46_04640 0.17 -0.1
994,945 - IAI46_04640 0.17 +0.2
994,945 - IAI46_04640 0.17 -1.0
994,999 + IAI46_04640 0.22 -1.4
994,999 + IAI46_04640 0.22 -0.7
995,000 - IAI46_04640 0.22 +0.6
995,001 + IAI46_04640 0.22 -0.3
995,002 - IAI46_04640 0.22 -0.1
995,030 + IAI46_04640 0.25 +0.3
995,037 + IAI46_04640 0.25 -0.2
995,038 - IAI46_04640 0.25 +0.9
995,185 + IAI46_04640 0.38 +1.2
995,214 + IAI46_04640 0.41 -1.2
995,214 + IAI46_04640 0.41 -1.5
995,215 - IAI46_04640 0.41 +0.0
995,281 - IAI46_04640 0.47 -0.1
995,290 + IAI46_04640 0.48 -0.1
995,301 + IAI46_04640 0.49 +0.3
995,301 + IAI46_04640 0.49 -0.5
995,301 + IAI46_04640 0.49 -1.1
995,302 - IAI46_04640 0.49 -0.1
995,302 - IAI46_04640 0.49 +0.9
995,302 - IAI46_04640 0.49 +1.1
995,302 - IAI46_04640 0.49 +0.6
995,302 - IAI46_04640 0.49 -0.7
995,302 - IAI46_04640 0.49 +0.2
995,523 + IAI46_04640 0.69 +0.1
995,523 + IAI46_04640 0.69 -0.3
995,527 + IAI46_04640 0.69 +0.4
995,528 - IAI46_04640 0.69 +0.9
995,691 + IAI46_04640 0.84 +0.3
995,691 + IAI46_04640 0.84 +0.1
995,692 - IAI46_04640 0.84 +1.0
995,692 - IAI46_04640 0.84 +1.1
995,707 + IAI46_04640 0.85 +0.3
995,708 - IAI46_04640 0.85 +0.6
995,708 - IAI46_04640 0.85 -0.1
995,719 + IAI46_04640 0.86 -0.0
995,799 + -0.6
995,809 + +0.8
995,810 - -0.3
995,846 - +0.9
995,846 - -0.5
995,869 + -0.2
995,872 + -1.4
996,143 + IAI46_04645 0.13 +0.5
996,143 + IAI46_04645 0.13 -0.1
996,143 + IAI46_04645 0.13 +0.1
996,143 + IAI46_04645 0.13 +1.1
996,143 + IAI46_04645 0.13 +0.4
996,143 + IAI46_04645 0.13 -0.4
996,144 - IAI46_04645 0.13 -0.3
996,144 - IAI46_04645 0.13 +0.6
996,144 - IAI46_04645 0.13 +0.4
996,516 - IAI46_04645 0.31 +0.0
996,602 + IAI46_04645 0.35 +0.2
996,610 + IAI46_04645 0.35 +0.6
996,610 + IAI46_04645 0.35 -0.5
996,610 + IAI46_04645 0.35 +0.3
996,611 - IAI46_04645 0.35 -0.1
996,611 - IAI46_04645 0.35 -1.6
996,611 - IAI46_04645 0.35 +0.4
996,611 - IAI46_04645 0.35 -0.3
996,617 + IAI46_04645 0.35 -2.6
996,618 - IAI46_04645 0.35 -0.3
996,707 + IAI46_04645 0.40 +0.2
996,707 + IAI46_04645 0.40 +0.3
996,708 - IAI46_04645 0.40 -0.6
996,709 + IAI46_04645 0.40 +0.6
996,791 + IAI46_04645 0.44 +0.9
996,791 + IAI46_04645 0.44 +0.1
996,792 - IAI46_04645 0.44 +1.1
996,792 - IAI46_04645 0.44 -0.7
996,792 - IAI46_04645 0.44 +0.5
996,792 - IAI46_04645 0.44 +0.7
996,792 - IAI46_04645 0.44 +0.5
996,797 + IAI46_04645 0.44 -0.9
996,797 + IAI46_04645 0.44 -0.2
996,798 - IAI46_04645 0.44 +0.7
996,798 - IAI46_04645 0.44 +0.4
996,799 + IAI46_04645 0.44 +1.3
996,812 + IAI46_04645 0.45 -0.5
996,813 - IAI46_04645 0.45 +0.6

Or see this region's nucleotide sequence