Strain Fitness in Serratia liquefaciens MT49 around IAI46_04615

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04610 and IAI46_04615 are separated by 447 nucleotidesIAI46_04615 and IAI46_04620 are separated by 56 nucleotides IAI46_04610: IAI46_04610 - aquaporin Z, at 988,950 to 989,645 _04610 IAI46_04615: IAI46_04615 - esterase-like activity of phytase family protein, at 990,093 to 991,457 _04615 IAI46_04620: IAI46_04620 - low temperature requirement protein A, at 991,514 to 992,689 _04620 Position (kb) 990 991 992Strain fitness (log2 ratio) -1 0 1 2at 989.183 kb on + strand, within IAI46_04610at 989.184 kb on - strand, within IAI46_04610at 989.202 kb on - strand, within IAI46_04610at 989.227 kb on - strand, within IAI46_04610at 989.237 kb on + strand, within IAI46_04610at 989.348 kb on - strand, within IAI46_04610at 989.402 kb on + strand, within IAI46_04610at 989.403 kb on - strand, within IAI46_04610at 989.437 kb on - strand, within IAI46_04610at 989.477 kb on + strand, within IAI46_04610at 989.492 kb on - strand, within IAI46_04610at 989.492 kb on - strand, within IAI46_04610at 989.499 kb on - strand, within IAI46_04610at 989.505 kb on + strand, within IAI46_04610at 989.506 kb on - strand, within IAI46_04610at 989.546 kb on + strand, within IAI46_04610at 989.574 kb on + strand, within IAI46_04610at 989.574 kb on + strand, within IAI46_04610at 989.574 kb on + strand, within IAI46_04610at 989.575 kb on - strand, within IAI46_04610at 989.645 kb on + strandat 989.646 kb on - strandat 989.725 kb on + strandat 989.727 kb on + strandat 989.767 kb on - strandat 989.814 kb on - strandat 989.852 kb on - strandat 989.853 kb on + strandat 989.873 kb on - strandat 989.873 kb on - strandat 989.873 kb on - strandat 989.881 kb on + strandat 989.882 kb on - strandat 989.905 kb on + strandat 989.906 kb on - strandat 989.963 kb on + strandat 989.963 kb on + strandat 990.008 kb on + strandat 990.008 kb on + strandat 990.008 kb on + strandat 990.009 kb on - strandat 990.009 kb on - strandat 990.036 kb on + strandat 990.037 kb on - strandat 990.042 kb on + strandat 990.042 kb on + strandat 990.042 kb on + strandat 990.043 kb on - strandat 990.045 kb on + strandat 990.045 kb on + strandat 990.046 kb on - strandat 990.050 kb on + strandat 990.118 kb on + strandat 990.118 kb on + strandat 990.147 kb on + strandat 990.148 kb on - strandat 990.177 kb on + strandat 990.177 kb on + strandat 990.178 kb on - strandat 990.178 kb on - strandat 990.179 kb on + strandat 990.278 kb on - strand, within IAI46_04615at 990.383 kb on + strand, within IAI46_04615at 990.431 kb on - strand, within IAI46_04615at 990.432 kb on - strand, within IAI46_04615at 990.432 kb on - strand, within IAI46_04615at 990.480 kb on - strand, within IAI46_04615at 990.490 kb on + strand, within IAI46_04615at 990.606 kb on - strand, within IAI46_04615at 990.606 kb on - strand, within IAI46_04615at 990.606 kb on - strand, within IAI46_04615at 990.633 kb on + strand, within IAI46_04615at 990.634 kb on - strand, within IAI46_04615at 990.684 kb on + strand, within IAI46_04615at 990.737 kb on + strand, within IAI46_04615at 990.737 kb on + strand, within IAI46_04615at 990.821 kb on + strand, within IAI46_04615at 990.909 kb on + strand, within IAI46_04615at 990.909 kb on + strand, within IAI46_04615at 990.909 kb on + strand, within IAI46_04615at 990.909 kb on + strand, within IAI46_04615at 990.909 kb on + strand, within IAI46_04615at 990.909 kb on + strand, within IAI46_04615at 990.909 kb on + strand, within IAI46_04615at 990.909 kb on + strand, within IAI46_04615at 990.909 kb on + strand, within IAI46_04615at 990.910 kb on - strand, within IAI46_04615at 990.910 kb on - strand, within IAI46_04615at 990.910 kb on - strand, within IAI46_04615at 990.910 kb on - strand, within IAI46_04615at 990.910 kb on - strand, within IAI46_04615at 990.910 kb on - strand, within IAI46_04615at 990.910 kb on - strand, within IAI46_04615at 990.933 kb on - strand, within IAI46_04615at 990.933 kb on - strand, within IAI46_04615at 990.933 kb on - strand, within IAI46_04615at 990.936 kb on + strand, within IAI46_04615at 990.936 kb on + strand, within IAI46_04615at 990.936 kb on + strand, within IAI46_04615at 990.936 kb on + strand, within IAI46_04615at 990.937 kb on - strand, within IAI46_04615at 990.937 kb on - strand, within IAI46_04615at 990.992 kb on + strand, within IAI46_04615at 990.992 kb on + strand, within IAI46_04615at 990.992 kb on + strand, within IAI46_04615at 990.993 kb on - strand, within IAI46_04615at 990.993 kb on - strand, within IAI46_04615at 991.040 kb on + strand, within IAI46_04615at 991.040 kb on + strand, within IAI46_04615at 991.047 kb on + strand, within IAI46_04615at 991.047 kb on + strand, within IAI46_04615at 991.048 kb on - strand, within IAI46_04615at 991.095 kb on - strand, within IAI46_04615at 991.184 kb on + strand, within IAI46_04615at 991.185 kb on - strand, within IAI46_04615at 991.210 kb on + strand, within IAI46_04615at 991.210 kb on + strand, within IAI46_04615at 991.211 kb on - strand, within IAI46_04615at 991.211 kb on - strand, within IAI46_04615at 991.335 kb on - strandat 991.455 kb on + strandat 991.456 kb on - strandat 991.555 kb on + strandat 991.613 kb on + strandat 991.626 kb on + strandat 991.626 kb on + strandat 991.626 kb on + strandat 991.627 kb on - strandat 991.692 kb on + strand, within IAI46_04620at 991.707 kb on + strand, within IAI46_04620at 991.707 kb on + strand, within IAI46_04620at 991.729 kb on - strand, within IAI46_04620at 991.729 kb on - strand, within IAI46_04620at 991.850 kb on + strand, within IAI46_04620at 991.850 kb on + strand, within IAI46_04620at 991.850 kb on + strand, within IAI46_04620at 991.850 kb on + strand, within IAI46_04620at 991.850 kb on + strand, within IAI46_04620at 991.851 kb on - strand, within IAI46_04620at 991.851 kb on - strand, within IAI46_04620at 991.851 kb on - strand, within IAI46_04620at 991.854 kb on + strand, within IAI46_04620at 991.855 kb on - strand, within IAI46_04620at 991.900 kb on + strand, within IAI46_04620at 991.901 kb on - strand, within IAI46_04620at 991.901 kb on - strand, within IAI46_04620at 992.057 kb on + strand, within IAI46_04620at 992.069 kb on + strand, within IAI46_04620at 992.069 kb on + strand, within IAI46_04620at 992.105 kb on - strand, within IAI46_04620at 992.184 kb on - strand, within IAI46_04620at 992.213 kb on - strand, within IAI46_04620at 992.257 kb on + strand, within IAI46_04620at 992.258 kb on - strand, within IAI46_04620at 992.258 kb on - strand, within IAI46_04620at 992.276 kb on - strand, within IAI46_04620at 992.453 kb on - strand, within IAI46_04620

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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989,183 + IAI46_04610 0.33 +0.2
989,184 - IAI46_04610 0.34 -0.6
989,202 - IAI46_04610 0.36 -0.3
989,227 - IAI46_04610 0.40 +0.3
989,237 + IAI46_04610 0.41 -1.1
989,348 - IAI46_04610 0.57 -0.7
989,402 + IAI46_04610 0.65 +0.0
989,403 - IAI46_04610 0.65 +1.0
989,437 - IAI46_04610 0.70 +0.2
989,477 + IAI46_04610 0.76 +0.1
989,492 - IAI46_04610 0.78 -1.3
989,492 - IAI46_04610 0.78 +0.5
989,499 - IAI46_04610 0.79 -0.7
989,505 + IAI46_04610 0.80 +0.5
989,506 - IAI46_04610 0.80 +0.1
989,546 + IAI46_04610 0.86 -1.5
989,574 + IAI46_04610 0.90 +0.8
989,574 + IAI46_04610 0.90 -0.2
989,574 + IAI46_04610 0.90 +0.6
989,575 - IAI46_04610 0.90 -1.0
989,645 + +1.2
989,646 - +0.9
989,725 + -0.1
989,727 + -0.5
989,767 - -0.2
989,814 - +1.3
989,852 - -0.6
989,853 + +0.0
989,873 - +0.3
989,873 - -0.2
989,873 - +0.3
989,881 + -1.1
989,882 - +0.1
989,905 + +1.1
989,906 - +0.2
989,963 + +0.3
989,963 + -0.1
990,008 + +0.6
990,008 + +0.8
990,008 + -0.5
990,009 - +0.4
990,009 - +1.4
990,036 + +0.6
990,037 - +0.1
990,042 + +0.1
990,042 + +0.3
990,042 + +0.2
990,043 - -0.0
990,045 + +0.1
990,045 + +0.5
990,046 - -0.0
990,050 + +0.5
990,118 + +0.4
990,118 + +0.5
990,147 + +0.1
990,148 - +0.2
990,177 + +0.1
990,177 + +1.4
990,178 - +0.8
990,178 - +1.0
990,179 + +0.5
990,278 - IAI46_04615 0.14 -0.2
990,383 + IAI46_04615 0.21 +0.3
990,431 - IAI46_04615 0.25 +0.9
990,432 - IAI46_04615 0.25 +1.1
990,432 - IAI46_04615 0.25 -0.1
990,480 - IAI46_04615 0.28 +0.1
990,490 + IAI46_04615 0.29 -0.6
990,606 - IAI46_04615 0.38 -0.3
990,606 - IAI46_04615 0.38 -0.2
990,606 - IAI46_04615 0.38 +0.5
990,633 + IAI46_04615 0.40 +0.3
990,634 - IAI46_04615 0.40 +2.1
990,684 + IAI46_04615 0.43 +0.3
990,737 + IAI46_04615 0.47 +0.3
990,737 + IAI46_04615 0.47 +0.5
990,821 + IAI46_04615 0.53 +0.2
990,909 + IAI46_04615 0.60 +0.3
990,909 + IAI46_04615 0.60 -0.4
990,909 + IAI46_04615 0.60 +1.1
990,909 + IAI46_04615 0.60 -0.3
990,909 + IAI46_04615 0.60 -1.2
990,909 + IAI46_04615 0.60 -0.2
990,909 + IAI46_04615 0.60 +0.4
990,909 + IAI46_04615 0.60 +0.5
990,909 + IAI46_04615 0.60 +0.2
990,910 - IAI46_04615 0.60 -0.3
990,910 - IAI46_04615 0.60 -0.1
990,910 - IAI46_04615 0.60 +0.8
990,910 - IAI46_04615 0.60 +0.7
990,910 - IAI46_04615 0.60 +0.2
990,910 - IAI46_04615 0.60 -0.3
990,910 - IAI46_04615 0.60 -0.6
990,933 - IAI46_04615 0.62 +0.1
990,933 - IAI46_04615 0.62 -0.2
990,933 - IAI46_04615 0.62 +0.2
990,936 + IAI46_04615 0.62 -0.2
990,936 + IAI46_04615 0.62 +1.1
990,936 + IAI46_04615 0.62 +0.3
990,936 + IAI46_04615 0.62 +1.0
990,937 - IAI46_04615 0.62 +0.5
990,937 - IAI46_04615 0.62 -0.0
990,992 + IAI46_04615 0.66 +0.5
990,992 + IAI46_04615 0.66 -0.7
990,992 + IAI46_04615 0.66 +0.1
990,993 - IAI46_04615 0.66 +0.1
990,993 - IAI46_04615 0.66 +1.0
991,040 + IAI46_04615 0.69 +0.2
991,040 + IAI46_04615 0.69 +1.1
991,047 + IAI46_04615 0.70 -1.2
991,047 + IAI46_04615 0.70 +0.1
991,048 - IAI46_04615 0.70 +0.3
991,095 - IAI46_04615 0.73 +0.2
991,184 + IAI46_04615 0.80 -0.4
991,185 - IAI46_04615 0.80 +0.3
991,210 + IAI46_04615 0.82 +0.8
991,210 + IAI46_04615 0.82 +0.1
991,211 - IAI46_04615 0.82 -0.5
991,211 - IAI46_04615 0.82 -0.4
991,335 - +1.5
991,455 + +0.8
991,456 - -0.1
991,555 + +0.3
991,613 + -0.4
991,626 + +0.7
991,626 + +0.1
991,626 + +1.7
991,627 - +0.4
991,692 + IAI46_04620 0.15 -0.2
991,707 + IAI46_04620 0.16 -0.4
991,707 + IAI46_04620 0.16 -0.2
991,729 - IAI46_04620 0.18 +0.4
991,729 - IAI46_04620 0.18 +0.1
991,850 + IAI46_04620 0.29 +0.4
991,850 + IAI46_04620 0.29 +0.5
991,850 + IAI46_04620 0.29 -0.1
991,850 + IAI46_04620 0.29 +0.1
991,850 + IAI46_04620 0.29 -1.1
991,851 - IAI46_04620 0.29 -0.4
991,851 - IAI46_04620 0.29 +0.9
991,851 - IAI46_04620 0.29 -0.1
991,854 + IAI46_04620 0.29 +0.0
991,855 - IAI46_04620 0.29 -0.0
991,900 + IAI46_04620 0.33 +0.3
991,901 - IAI46_04620 0.33 +0.5
991,901 - IAI46_04620 0.33 +0.1
992,057 + IAI46_04620 0.46 +0.1
992,069 + IAI46_04620 0.47 +0.4
992,069 + IAI46_04620 0.47 +0.5
992,105 - IAI46_04620 0.50 +0.5
992,184 - IAI46_04620 0.57 +0.7
992,213 - IAI46_04620 0.59 -0.4
992,257 + IAI46_04620 0.63 +0.7
992,258 - IAI46_04620 0.63 +0.2
992,258 - IAI46_04620 0.63 -0.1
992,276 - IAI46_04620 0.65 -0.6
992,453 - IAI46_04620 0.80 -1.2

Or see this region's nucleotide sequence