Strain Fitness in Serratia liquefaciens MT49 around IAI46_04575

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04565 and IAI46_04570 are separated by 137 nucleotidesIAI46_04570 and IAI46_04575 are separated by 171 nucleotidesIAI46_04575 and IAI46_04580 are separated by 61 nucleotidesIAI46_04580 and IAI46_04585 are separated by 86 nucleotidesIAI46_04585 and IAI46_04590 overlap by 13 nucleotides IAI46_04565: IAI46_04565 - pirin family protein, at 982,628 to 983,509 _04565 IAI46_04570: IAI46_04570 - hydrolase, at 983,647 to 984,273 _04570 IAI46_04575: IAI46_04575 - hypothetical protein, at 984,445 to 984,777 _04575 IAI46_04580: IAI46_04580 - thiol-disulfide oxidoreductase DCC family protein, at 984,839 to 985,291 _04580 IAI46_04585: IAI46_04585 - ABC transporter ATP-binding protein, at 985,378 to 985,641 _04585 IAI46_04590: IAI46_04590 - GNAT family N-acetyltransferase, at 985,629 to 986,180 _04590 Position (kb) 984 985Strain fitness (log2 ratio) -2 -1 0 1at 983.527 kb on + strandat 983.527 kb on + strandat 983.528 kb on - strandat 983.564 kb on + strandat 983.570 kb on + strandat 983.571 kb on - strandat 983.571 kb on - strandat 983.571 kb on - strandat 983.574 kb on + strandat 983.574 kb on + strandat 983.575 kb on - strandat 983.622 kb on - strandat 983.641 kb on + strandat 983.642 kb on - strandat 983.755 kb on - strand, within IAI46_04570at 983.765 kb on + strand, within IAI46_04570at 983.765 kb on + strand, within IAI46_04570at 983.766 kb on - strand, within IAI46_04570at 983.766 kb on - strand, within IAI46_04570at 983.783 kb on + strand, within IAI46_04570at 983.791 kb on + strand, within IAI46_04570at 983.796 kb on + strand, within IAI46_04570at 983.796 kb on + strand, within IAI46_04570at 983.909 kb on + strand, within IAI46_04570at 983.909 kb on + strand, within IAI46_04570at 983.910 kb on - strand, within IAI46_04570at 983.969 kb on + strand, within IAI46_04570at 983.969 kb on + strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.970 kb on - strand, within IAI46_04570at 983.973 kb on + strand, within IAI46_04570at 984.051 kb on - strand, within IAI46_04570at 984.051 kb on - strand, within IAI46_04570at 984.108 kb on + strand, within IAI46_04570at 984.247 kb on + strandat 984.248 kb on - strandat 984.248 kb on - strandat 984.248 kb on - strandat 984.271 kb on + strandat 984.344 kb on + strandat 984.344 kb on + strandat 984.345 kb on - strandat 984.345 kb on - strandat 984.345 kb on - strandat 984.408 kb on + strandat 984.408 kb on + strandat 984.413 kb on + strandat 984.464 kb on + strandat 984.573 kb on - strand, within IAI46_04575at 984.594 kb on + strand, within IAI46_04575at 984.595 kb on - strand, within IAI46_04575at 984.595 kb on - strand, within IAI46_04575at 984.595 kb on - strand, within IAI46_04575at 984.595 kb on - strand, within IAI46_04575at 984.600 kb on + strand, within IAI46_04575at 984.600 kb on + strand, within IAI46_04575at 984.675 kb on + strand, within IAI46_04575at 984.675 kb on + strand, within IAI46_04575at 984.675 kb on + strand, within IAI46_04575at 984.675 kb on + strand, within IAI46_04575at 984.676 kb on - strand, within IAI46_04575at 984.676 kb on - strand, within IAI46_04575at 984.676 kb on - strand, within IAI46_04575at 984.716 kb on - strand, within IAI46_04575at 984.863 kb on + strandat 984.863 kb on + strandat 984.863 kb on + strandat 984.864 kb on - strandat 984.864 kb on - strandat 985.050 kb on - strand, within IAI46_04580at 985.050 kb on - strand, within IAI46_04580at 985.175 kb on + strand, within IAI46_04580at 985.175 kb on + strand, within IAI46_04580at 985.176 kb on - strand, within IAI46_04580at 985.176 kb on - strand, within IAI46_04580at 985.199 kb on + strand, within IAI46_04580at 985.201 kb on + strand, within IAI46_04580at 985.201 kb on + strand, within IAI46_04580at 985.202 kb on - strand, within IAI46_04580at 985.202 kb on - strand, within IAI46_04580at 985.206 kb on + strand, within IAI46_04580at 985.207 kb on - strand, within IAI46_04580at 985.207 kb on - strand, within IAI46_04580at 985.313 kb on + strandat 985.364 kb on - strandat 985.364 kb on - strandat 985.399 kb on + strandat 985.399 kb on + strandat 985.399 kb on + strandat 985.400 kb on - strandat 985.474 kb on + strand, within IAI46_04585at 985.475 kb on - strand, within IAI46_04585at 985.485 kb on + strand, within IAI46_04585at 985.540 kb on - strand, within IAI46_04585at 985.581 kb on + strand, within IAI46_04585at 985.642 kb on + strandat 985.655 kb on + strandat 985.656 kb on - strandat 985.663 kb on + strandat 985.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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983,527 + +1.3
983,527 + +0.1
983,528 - -0.7
983,564 + -0.3
983,570 + +0.7
983,571 - +0.0
983,571 - -0.4
983,571 - +0.3
983,574 + -0.2
983,574 + +0.7
983,575 - +0.0
983,622 - +1.2
983,641 + -0.5
983,642 - +0.6
983,755 - IAI46_04570 0.17 +0.8
983,765 + IAI46_04570 0.19 +0.3
983,765 + IAI46_04570 0.19 -0.2
983,766 - IAI46_04570 0.19 -0.7
983,766 - IAI46_04570 0.19 +1.1
983,783 + IAI46_04570 0.22 +1.1
983,791 + IAI46_04570 0.23 +1.2
983,796 + IAI46_04570 0.24 +0.7
983,796 + IAI46_04570 0.24 -0.3
983,909 + IAI46_04570 0.42 +0.9
983,909 + IAI46_04570 0.42 +1.0
983,910 - IAI46_04570 0.42 -0.0
983,969 + IAI46_04570 0.51 +0.8
983,969 + IAI46_04570 0.51 +0.4
983,970 - IAI46_04570 0.52 -1.5
983,970 - IAI46_04570 0.52 -0.8
983,970 - IAI46_04570 0.52 +0.2
983,970 - IAI46_04570 0.52 -2.0
983,970 - IAI46_04570 0.52 -0.4
983,973 + IAI46_04570 0.52 +0.0
984,051 - IAI46_04570 0.64 -0.7
984,051 - IAI46_04570 0.64 +1.6
984,108 + IAI46_04570 0.74 -1.6
984,247 + +0.6
984,248 - -0.3
984,248 - -0.0
984,248 - +0.2
984,271 + +0.2
984,344 + +0.0
984,344 + +0.3
984,345 - +0.5
984,345 - +0.3
984,345 - -1.1
984,408 + +0.6
984,408 + -0.8
984,413 + +0.4
984,464 + +0.4
984,573 - IAI46_04575 0.38 +0.9
984,594 + IAI46_04575 0.45 +0.2
984,595 - IAI46_04575 0.45 -0.2
984,595 - IAI46_04575 0.45 -0.3
984,595 - IAI46_04575 0.45 -0.4
984,595 - IAI46_04575 0.45 -0.8
984,600 + IAI46_04575 0.47 -0.5
984,600 + IAI46_04575 0.47 +0.9
984,675 + IAI46_04575 0.69 +0.5
984,675 + IAI46_04575 0.69 +0.3
984,675 + IAI46_04575 0.69 -0.2
984,675 + IAI46_04575 0.69 +0.6
984,676 - IAI46_04575 0.69 -1.3
984,676 - IAI46_04575 0.69 +0.1
984,676 - IAI46_04575 0.69 -0.8
984,716 - IAI46_04575 0.81 -0.8
984,863 + +0.5
984,863 + +0.3
984,863 + +0.1
984,864 - +0.9
984,864 - +0.9
985,050 - IAI46_04580 0.47 +0.1
985,050 - IAI46_04580 0.47 +0.5
985,175 + IAI46_04580 0.74 +0.8
985,175 + IAI46_04580 0.74 -0.1
985,176 - IAI46_04580 0.74 +0.1
985,176 - IAI46_04580 0.74 +0.3
985,199 + IAI46_04580 0.79 +0.2
985,201 + IAI46_04580 0.80 +0.5
985,201 + IAI46_04580 0.80 -0.9
985,202 - IAI46_04580 0.80 +0.2
985,202 - IAI46_04580 0.80 -0.1
985,206 + IAI46_04580 0.81 -1.4
985,207 - IAI46_04580 0.81 +0.1
985,207 - IAI46_04580 0.81 -0.2
985,313 + +0.8
985,364 - +1.1
985,364 - +0.2
985,399 + +0.0
985,399 + -0.1
985,399 + +0.8
985,400 - -0.0
985,474 + IAI46_04585 0.36 -0.5
985,475 - IAI46_04585 0.37 -0.7
985,485 + IAI46_04585 0.41 +0.3
985,540 - IAI46_04585 0.61 +0.5
985,581 + IAI46_04585 0.77 +0.5
985,642 + -0.4
985,655 + -0.4
985,656 - +0.1
985,663 + -0.0
985,664 - +0.1

Or see this region's nucleotide sequence