Strain Fitness in Serratia liquefaciens MT49 around IAI46_04210

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04205 and IAI46_04210 are separated by 5 nucleotidesIAI46_04210 and IAI46_04215 are separated by 9 nucleotidesIAI46_04215 and IAI46_04220 overlap by 40 nucleotidesIAI46_04220 and IAI46_04225 are separated by 89 nucleotidesIAI46_04225 and IAI46_04230 are separated by 3 nucleotides IAI46_04205: IAI46_04205 - MFS transporter, at 906,848 to 908,071 _04205 IAI46_04210: IAI46_04210 - siderophore-interacting protein, at 908,077 to 908,961 _04210 IAI46_04215: IAI46_04215 - type II toxin-antitoxin system RelE/ParE family toxin, at 908,971 to 909,210 _04215 IAI46_04220: IAI46_04220 - ribbon-helix-helix protein, CopG family, at 909,171 to 909,323 _04220 IAI46_04225: IAI46_04225 - oxalurate catabolism protein HpxZ, at 909,413 to 909,796 _04225 IAI46_04230: IAI46_04230 - AtzE family amidohydrolase, at 909,800 to 911,200 _04230 Position (kb) 908 909Strain fitness (log2 ratio) -2 -1 0 1 2at 907.101 kb on + strand, within IAI46_04205at 907.101 kb on + strand, within IAI46_04205at 907.102 kb on - strand, within IAI46_04205at 907.141 kb on - strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.222 kb on + strand, within IAI46_04205at 907.223 kb on - strand, within IAI46_04205at 907.223 kb on - strand, within IAI46_04205at 907.300 kb on + strand, within IAI46_04205at 907.300 kb on + strand, within IAI46_04205at 907.301 kb on - strand, within IAI46_04205at 907.434 kb on + strand, within IAI46_04205at 907.435 kb on - strand, within IAI46_04205at 907.441 kb on - strand, within IAI46_04205at 907.456 kb on + strand, within IAI46_04205at 907.456 kb on + strand, within IAI46_04205at 907.456 kb on + strand, within IAI46_04205at 907.510 kb on + strand, within IAI46_04205at 907.510 kb on + strand, within IAI46_04205at 907.510 kb on + strand, within IAI46_04205at 907.511 kb on - strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.520 kb on + strand, within IAI46_04205at 907.521 kb on - strand, within IAI46_04205at 907.521 kb on - strand, within IAI46_04205at 907.597 kb on - strand, within IAI46_04205at 907.597 kb on - strand, within IAI46_04205at 907.664 kb on - strand, within IAI46_04205at 907.664 kb on - strand, within IAI46_04205at 907.747 kb on - strand, within IAI46_04205at 907.785 kb on + strand, within IAI46_04205at 907.786 kb on - strand, within IAI46_04205at 907.786 kb on - strand, within IAI46_04205at 907.790 kb on + strand, within IAI46_04205at 907.791 kb on - strand, within IAI46_04205at 907.791 kb on - strand, within IAI46_04205at 907.791 kb on - strand, within IAI46_04205at 907.841 kb on + strand, within IAI46_04205at 907.898 kb on - strand, within IAI46_04205at 907.898 kb on - strand, within IAI46_04205at 907.906 kb on + strand, within IAI46_04205at 908.069 kb on + strandat 908.076 kb on + strandat 908.076 kb on + strandat 908.076 kb on + strandat 908.076 kb on + strandat 908.077 kb on - strandat 908.077 kb on - strandat 908.284 kb on + strand, within IAI46_04210at 908.284 kb on + strand, within IAI46_04210at 908.286 kb on + strand, within IAI46_04210at 908.287 kb on - strand, within IAI46_04210at 908.287 kb on - strand, within IAI46_04210at 908.326 kb on + strand, within IAI46_04210at 908.327 kb on - strand, within IAI46_04210at 908.327 kb on - strand, within IAI46_04210at 908.328 kb on + strand, within IAI46_04210at 908.439 kb on + strand, within IAI46_04210at 908.451 kb on - strand, within IAI46_04210at 908.677 kb on + strand, within IAI46_04210at 908.719 kb on - strand, within IAI46_04210at 908.750 kb on + strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.755 kb on - strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.851 kb on + strand, within IAI46_04210at 908.899 kb on + strandat 908.950 kb on + strandat 908.951 kb on - strandat 908.951 kb on - strandat 908.951 kb on - strandat 909.035 kb on + strand, within IAI46_04215at 909.045 kb on + strand, within IAI46_04215at 909.045 kb on + strand, within IAI46_04215at 909.097 kb on - strand, within IAI46_04215at 909.150 kb on + strand, within IAI46_04215at 909.151 kb on - strand, within IAI46_04215at 909.209 kb on - strandat 909.231 kb on - strand, within IAI46_04220at 909.231 kb on - strand, within IAI46_04220at 909.284 kb on + strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.285 kb on - strand, within IAI46_04220at 909.323 kb on + strandat 909.323 kb on + strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.324 kb on - strandat 909.338 kb on - strandat 909.338 kb on - strandat 909.342 kb on - strandat 909.347 kb on + strandat 909.351 kb on - strandat 909.351 kb on - strandat 909.351 kb on - strandat 909.363 kb on + strandat 909.363 kb on + strandat 909.364 kb on - strandat 909.364 kb on - strandat 909.364 kb on - strandat 909.366 kb on - strandat 909.366 kb on - strandat 909.366 kb on - strandat 909.538 kb on + strand, within IAI46_04225at 909.539 kb on - strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.549 kb on + strand, within IAI46_04225at 909.550 kb on - strand, within IAI46_04225at 909.550 kb on - strand, within IAI46_04225at 909.550 kb on - strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.706 kb on + strand, within IAI46_04225at 909.782 kb on - strandat 909.783 kb on + strandat 909.783 kb on + strandat 909.784 kb on - strandat 909.784 kb on - strandat 909.784 kb on - strandat 909.801 kb on + strandat 909.802 kb on - strandat 909.856 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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907,101 + IAI46_04205 0.21 +0.6
907,101 + IAI46_04205 0.21 -0.9
907,102 - IAI46_04205 0.21 -1.7
907,141 - IAI46_04205 0.24 +0.2
907,222 + IAI46_04205 0.31 +0.1
907,222 + IAI46_04205 0.31 +0.4
907,222 + IAI46_04205 0.31 +0.6
907,222 + IAI46_04205 0.31 -0.0
907,223 - IAI46_04205 0.31 -0.3
907,223 - IAI46_04205 0.31 +0.6
907,300 + IAI46_04205 0.37 -1.2
907,300 + IAI46_04205 0.37 -0.9
907,301 - IAI46_04205 0.37 -0.1
907,434 + IAI46_04205 0.48 +0.4
907,435 - IAI46_04205 0.48 +0.4
907,441 - IAI46_04205 0.48 -1.7
907,456 + IAI46_04205 0.50 -1.2
907,456 + IAI46_04205 0.50 +0.8
907,456 + IAI46_04205 0.50 -1.9
907,510 + IAI46_04205 0.54 +0.1
907,510 + IAI46_04205 0.54 -0.3
907,510 + IAI46_04205 0.54 -0.7
907,511 - IAI46_04205 0.54 +0.3
907,520 + IAI46_04205 0.55 +0.3
907,520 + IAI46_04205 0.55 +0.4
907,520 + IAI46_04205 0.55 +0.3
907,520 + IAI46_04205 0.55 -0.2
907,520 + IAI46_04205 0.55 +0.9
907,521 - IAI46_04205 0.55 +1.1
907,521 - IAI46_04205 0.55 -0.7
907,597 - IAI46_04205 0.61 +0.8
907,597 - IAI46_04205 0.61 +0.2
907,664 - IAI46_04205 0.67 -0.9
907,664 - IAI46_04205 0.67 +0.2
907,747 - IAI46_04205 0.73 +0.8
907,785 + IAI46_04205 0.77 +0.6
907,786 - IAI46_04205 0.77 -0.1
907,786 - IAI46_04205 0.77 +0.8
907,790 + IAI46_04205 0.77 +0.4
907,791 - IAI46_04205 0.77 +0.5
907,791 - IAI46_04205 0.77 -0.1
907,791 - IAI46_04205 0.77 -0.1
907,841 + IAI46_04205 0.81 -0.8
907,898 - IAI46_04205 0.86 +0.3
907,898 - IAI46_04205 0.86 +1.0
907,906 + IAI46_04205 0.86 +0.1
908,069 + -2.0
908,076 + -0.4
908,076 + +0.1
908,076 + -0.2
908,076 + +0.5
908,077 - +0.4
908,077 - +0.2
908,284 + IAI46_04210 0.23 +0.8
908,284 + IAI46_04210 0.23 +0.5
908,286 + IAI46_04210 0.24 -0.3
908,287 - IAI46_04210 0.24 -0.0
908,287 - IAI46_04210 0.24 +0.8
908,326 + IAI46_04210 0.28 -0.8
908,327 - IAI46_04210 0.28 -1.9
908,327 - IAI46_04210 0.28 -0.3
908,328 + IAI46_04210 0.28 -0.0
908,439 + IAI46_04210 0.41 -0.1
908,451 - IAI46_04210 0.42 +0.8
908,677 + IAI46_04210 0.68 +0.5
908,719 - IAI46_04210 0.73 -0.3
908,750 + IAI46_04210 0.76 -0.7
908,755 - IAI46_04210 0.77 +0.4
908,755 - IAI46_04210 0.77 +0.1
908,755 - IAI46_04210 0.77 +1.3
908,755 - IAI46_04210 0.77 +2.0
908,851 + IAI46_04210 0.87 +0.2
908,851 + IAI46_04210 0.87 +0.6
908,851 + IAI46_04210 0.87 +0.1
908,851 + IAI46_04210 0.87 +0.0
908,851 + IAI46_04210 0.87 +1.9
908,899 + -0.5
908,950 + +0.4
908,951 - +0.4
908,951 - +0.1
908,951 - +0.8
909,035 + IAI46_04215 0.27 +0.4
909,045 + IAI46_04215 0.31 +1.6
909,045 + IAI46_04215 0.31 -0.2
909,097 - IAI46_04215 0.53 +1.3
909,150 + IAI46_04215 0.75 +0.2
909,151 - IAI46_04215 0.75 -1.0
909,209 - -0.9
909,231 - IAI46_04220 0.39 +0.3
909,231 - IAI46_04220 0.39 +1.0
909,284 + IAI46_04220 0.74 +0.2
909,285 - IAI46_04220 0.75 +0.0
909,285 - IAI46_04220 0.75 +1.5
909,285 - IAI46_04220 0.75 +0.1
909,285 - IAI46_04220 0.75 +0.6
909,323 + -0.4
909,323 + -0.2
909,324 - +0.4
909,324 - +0.3
909,324 - +0.7
909,324 - +1.4
909,324 - +0.8
909,338 - +0.1
909,338 - +0.7
909,342 - +0.7
909,347 + +0.2
909,351 - -0.2
909,351 - +0.1
909,351 - +0.2
909,363 + +0.5
909,363 + -0.2
909,364 - -0.3
909,364 - +1.1
909,364 - -0.5
909,366 - +0.4
909,366 - -0.1
909,366 - +0.7
909,538 + IAI46_04225 0.33 +1.5
909,539 - IAI46_04225 0.33 +1.1
909,549 + IAI46_04225 0.35 +1.9
909,549 + IAI46_04225 0.35 -0.1
909,549 + IAI46_04225 0.35 -2.6
909,549 + IAI46_04225 0.35 -0.2
909,549 + IAI46_04225 0.35 +1.0
909,550 - IAI46_04225 0.36 +0.8
909,550 - IAI46_04225 0.36 +0.4
909,550 - IAI46_04225 0.36 +0.5
909,706 + IAI46_04225 0.76 +0.2
909,706 + IAI46_04225 0.76 +0.0
909,706 + IAI46_04225 0.76 -0.2
909,706 + IAI46_04225 0.76 +0.8
909,782 - +0.4
909,783 + -0.2
909,783 + -1.0
909,784 - -0.4
909,784 - -2.5
909,784 - -0.3
909,801 + +0.4
909,802 - -0.1
909,856 - +0.5

Or see this region's nucleotide sequence