Strain Fitness in Serratia liquefaciens MT49 around IAI46_03620

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03615 and IAI46_03620 are separated by 297 nucleotidesIAI46_03620 and IAI46_03625 are separated by 10 nucleotidesIAI46_03625 and IAI46_03630 are separated by 46 nucleotides IAI46_03615: IAI46_03615 - phosphopyruvate hydratase, at 786,008 to 787,303 _03615 IAI46_03620: IAI46_03620 - NAD(P)/FAD-dependent oxidoreductase, at 787,601 to 788,791 _03620 IAI46_03625: IAI46_03625 - hypothetical protein, at 788,802 to 789,173 _03625 IAI46_03630: IAI46_03630 - methionine gamma-lyase, at 789,220 to 790,410 _03630 Position (kb) 787 788 789Strain fitness (log2 ratio) -2 -1 0 1 2 3at 787.291 kb on + strandat 787.301 kb on + strandat 787.323 kb on + strandat 787.324 kb on - strandat 787.370 kb on + strandat 787.504 kb on + strandat 787.504 kb on + strandat 787.529 kb on + strandat 787.538 kb on - strandat 787.647 kb on + strandat 787.648 kb on - strandat 787.686 kb on + strandat 787.696 kb on + strandat 787.739 kb on + strand, within IAI46_03620at 787.754 kb on - strand, within IAI46_03620at 787.758 kb on - strand, within IAI46_03620at 787.758 kb on - strand, within IAI46_03620at 787.758 kb on - strand, within IAI46_03620at 787.834 kb on + strand, within IAI46_03620at 787.864 kb on - strand, within IAI46_03620at 787.907 kb on + strand, within IAI46_03620at 787.908 kb on - strand, within IAI46_03620at 787.989 kb on - strand, within IAI46_03620at 787.994 kb on + strand, within IAI46_03620at 787.994 kb on + strand, within IAI46_03620at 788.138 kb on + strand, within IAI46_03620at 788.180 kb on + strand, within IAI46_03620at 788.181 kb on - strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.182 kb on + strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.183 kb on - strand, within IAI46_03620at 788.186 kb on + strand, within IAI46_03620at 788.186 kb on + strand, within IAI46_03620at 788.296 kb on + strand, within IAI46_03620at 788.365 kb on + strand, within IAI46_03620at 788.365 kb on + strand, within IAI46_03620at 788.481 kb on - strand, within IAI46_03620at 788.481 kb on - strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.498 kb on + strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.499 kb on - strand, within IAI46_03620at 788.512 kb on + strand, within IAI46_03620at 788.621 kb on + strand, within IAI46_03620at 788.682 kb on - strandat 788.682 kb on - strandat 788.750 kb on - strandat 788.848 kb on + strand, within IAI46_03625at 788.848 kb on + strand, within IAI46_03625at 788.849 kb on - strand, within IAI46_03625at 788.849 kb on - strand, within IAI46_03625at 789.064 kb on - strand, within IAI46_03625at 789.064 kb on - strand, within IAI46_03625at 789.117 kb on - strand, within IAI46_03625at 789.140 kb on + strandat 789.140 kb on + strandat 789.180 kb on + strandat 789.180 kb on + strandat 789.181 kb on - strandat 789.181 kb on - strandat 789.208 kb on + strandat 789.272 kb on - strandat 789.286 kb on + strandat 789.315 kb on + strandat 789.331 kb on - strandat 789.349 kb on + strand, within IAI46_03630at 789.349 kb on + strand, within IAI46_03630at 789.350 kb on - strand, within IAI46_03630at 789.350 kb on - strand, within IAI46_03630at 789.484 kb on - strand, within IAI46_03630at 789.679 kb on + strand, within IAI46_03630at 789.679 kb on + strand, within IAI46_03630at 789.680 kb on - strand, within IAI46_03630at 789.775 kb on - strand, within IAI46_03630at 789.781 kb on + strand, within IAI46_03630at 789.781 kb on + strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630at 789.782 kb on - strand, within IAI46_03630

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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787,291 + -0.6
787,301 + -0.0
787,323 + +0.4
787,324 - +0.2
787,370 + +0.1
787,504 + +0.8
787,504 + -0.6
787,529 + +0.8
787,538 - +0.8
787,647 + +0.1
787,648 - +0.1
787,686 + +0.6
787,696 + +0.5
787,739 + IAI46_03620 0.12 -1.1
787,754 - IAI46_03620 0.13 -0.1
787,758 - IAI46_03620 0.13 -0.4
787,758 - IAI46_03620 0.13 +1.3
787,758 - IAI46_03620 0.13 -0.9
787,834 + IAI46_03620 0.20 +0.1
787,864 - IAI46_03620 0.22 +0.6
787,907 + IAI46_03620 0.26 -0.4
787,908 - IAI46_03620 0.26 +0.1
787,989 - IAI46_03620 0.33 +0.1
787,994 + IAI46_03620 0.33 -0.3
787,994 + IAI46_03620 0.33 +0.2
788,138 + IAI46_03620 0.45 +0.3
788,180 + IAI46_03620 0.49 +0.8
788,181 - IAI46_03620 0.49 -1.8
788,182 + IAI46_03620 0.49 +0.8
788,182 + IAI46_03620 0.49 -0.5
788,182 + IAI46_03620 0.49 -0.3
788,182 + IAI46_03620 0.49 +0.3
788,183 - IAI46_03620 0.49 +0.3
788,183 - IAI46_03620 0.49 +0.4
788,183 - IAI46_03620 0.49 +0.3
788,183 - IAI46_03620 0.49 -0.3
788,183 - IAI46_03620 0.49 -0.6
788,186 + IAI46_03620 0.49 +0.4
788,186 + IAI46_03620 0.49 +0.6
788,296 + IAI46_03620 0.58 +0.1
788,365 + IAI46_03620 0.64 +0.1
788,365 + IAI46_03620 0.64 +0.2
788,481 - IAI46_03620 0.74 -0.4
788,481 - IAI46_03620 0.74 +1.1
788,498 + IAI46_03620 0.75 -0.1
788,498 + IAI46_03620 0.75 -0.2
788,498 + IAI46_03620 0.75 +2.8
788,498 + IAI46_03620 0.75 +0.9
788,498 + IAI46_03620 0.75 +0.6
788,498 + IAI46_03620 0.75 +0.1
788,499 - IAI46_03620 0.75 +0.2
788,499 - IAI46_03620 0.75 +0.5
788,499 - IAI46_03620 0.75 +1.1
788,499 - IAI46_03620 0.75 -0.0
788,499 - IAI46_03620 0.75 +0.6
788,499 - IAI46_03620 0.75 +0.6
788,499 - IAI46_03620 0.75 -0.5
788,499 - IAI46_03620 0.75 +0.9
788,512 + IAI46_03620 0.76 +0.7
788,621 + IAI46_03620 0.86 -1.7
788,682 - +1.1
788,682 - +0.0
788,750 - +1.8
788,848 + IAI46_03625 0.12 +0.3
788,848 + IAI46_03625 0.12 +0.6
788,849 - IAI46_03625 0.13 -0.2
788,849 - IAI46_03625 0.13 +0.0
789,064 - IAI46_03625 0.70 -0.5
789,064 - IAI46_03625 0.70 -0.3
789,117 - IAI46_03625 0.85 +1.0
789,140 + -0.6
789,140 + +2.1
789,180 + +0.5
789,180 + +1.5
789,181 - -0.5
789,181 - +0.9
789,208 + +0.8
789,272 - -0.1
789,286 + +0.9
789,315 + +0.6
789,331 - +0.1
789,349 + IAI46_03630 0.11 +0.3
789,349 + IAI46_03630 0.11 -0.2
789,350 - IAI46_03630 0.11 +0.6
789,350 - IAI46_03630 0.11 +0.3
789,484 - IAI46_03630 0.22 +0.3
789,679 + IAI46_03630 0.39 +0.2
789,679 + IAI46_03630 0.39 +0.3
789,680 - IAI46_03630 0.39 +0.1
789,775 - IAI46_03630 0.47 +0.5
789,781 + IAI46_03630 0.47 -0.0
789,781 + IAI46_03630 0.47 -0.1
789,782 - IAI46_03630 0.47 -1.3
789,782 - IAI46_03630 0.47 +1.8
789,782 - IAI46_03630 0.47 -0.2
789,782 - IAI46_03630 0.47 +0.4
789,782 - IAI46_03630 0.47 +1.1
789,782 - IAI46_03630 0.47 +0.8

Or see this region's nucleotide sequence