Strain Fitness in Serratia liquefaciens MT49 around IAI46_03315

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03310 and IAI46_03315 overlap by 25 nucleotidesIAI46_03315 and IAI46_03320 are separated by 221 nucleotides IAI46_03310: IAI46_03310 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 714,115 to 715,719 _03310 IAI46_03315: IAI46_03315 - thiamine ABC transporter substrate binding subunit, at 715,695 to 716,681 _03315 IAI46_03320: IAI46_03320 - HTH-type transcriptional regulator SgrR, at 716,903 to 718,564 _03320 Position (kb) 715 716 717Strain fitness (log2 ratio) -1 0 1at 714.891 kb on + strand, within IAI46_03310at 714.892 kb on - strand, within IAI46_03310at 715.014 kb on - strand, within IAI46_03310at 715.014 kb on - strand, within IAI46_03310at 715.028 kb on + strand, within IAI46_03310at 715.028 kb on + strand, within IAI46_03310at 715.028 kb on + strand, within IAI46_03310at 715.029 kb on - strand, within IAI46_03310at 715.079 kb on - strand, within IAI46_03310at 715.107 kb on + strand, within IAI46_03310at 715.108 kb on - strand, within IAI46_03310at 715.310 kb on + strand, within IAI46_03310at 715.311 kb on - strand, within IAI46_03310at 715.311 kb on - strand, within IAI46_03310at 715.311 kb on - strand, within IAI46_03310at 715.311 kb on - strand, within IAI46_03310at 715.325 kb on + strand, within IAI46_03310at 715.326 kb on - strand, within IAI46_03310at 715.326 kb on - strand, within IAI46_03310at 715.326 kb on - strand, within IAI46_03310at 715.329 kb on + strand, within IAI46_03310at 715.329 kb on + strand, within IAI46_03310at 715.329 kb on + strand, within IAI46_03310at 715.329 kb on + strand, within IAI46_03310at 715.329 kb on + strand, within IAI46_03310at 715.330 kb on - strand, within IAI46_03310at 715.376 kb on + strand, within IAI46_03310at 715.377 kb on - strand, within IAI46_03310at 715.377 kb on - strand, within IAI46_03310at 715.377 kb on - strand, within IAI46_03310at 715.378 kb on + strand, within IAI46_03310at 715.378 kb on + strand, within IAI46_03310at 715.378 kb on + strand, within IAI46_03310at 715.378 kb on + strand, within IAI46_03310at 715.378 kb on + strand, within IAI46_03310at 715.378 kb on + strand, within IAI46_03310at 715.379 kb on - strand, within IAI46_03310at 715.379 kb on - strand, within IAI46_03310at 715.379 kb on - strand, within IAI46_03310at 715.379 kb on - strand, within IAI46_03310at 715.447 kb on + strand, within IAI46_03310at 715.448 kb on - strand, within IAI46_03310at 715.448 kb on - strand, within IAI46_03310at 715.555 kb on + strand, within IAI46_03310at 715.555 kb on + strand, within IAI46_03310at 715.568 kb on + strandat 715.569 kb on - strandat 715.582 kb on + strandat 715.582 kb on + strandat 715.584 kb on + strandat 715.584 kb on + strandat 715.585 kb on - strandat 715.585 kb on - strandat 715.585 kb on - strandat 715.586 kb on - strandat 715.750 kb on - strandat 715.766 kb on - strandat 715.834 kb on + strand, within IAI46_03315at 715.834 kb on + strand, within IAI46_03315at 715.834 kb on + strand, within IAI46_03315at 715.835 kb on - strand, within IAI46_03315at 715.892 kb on + strand, within IAI46_03315at 715.893 kb on - strand, within IAI46_03315at 715.957 kb on + strand, within IAI46_03315at 715.957 kb on + strand, within IAI46_03315at 715.958 kb on - strand, within IAI46_03315at 715.987 kb on + strand, within IAI46_03315at 715.987 kb on + strand, within IAI46_03315at 715.988 kb on - strand, within IAI46_03315at 716.018 kb on - strand, within IAI46_03315at 716.035 kb on + strand, within IAI46_03315at 716.035 kb on + strand, within IAI46_03315at 716.036 kb on - strand, within IAI46_03315at 716.039 kb on + strand, within IAI46_03315at 716.039 kb on + strand, within IAI46_03315at 716.040 kb on - strand, within IAI46_03315at 716.040 kb on - strand, within IAI46_03315at 716.040 kb on - strand, within IAI46_03315at 716.040 kb on - strand, within IAI46_03315at 716.077 kb on + strand, within IAI46_03315at 716.077 kb on + strand, within IAI46_03315at 716.078 kb on - strand, within IAI46_03315at 716.156 kb on - strand, within IAI46_03315at 716.216 kb on - strand, within IAI46_03315at 716.216 kb on - strand, within IAI46_03315at 716.216 kb on - strand, within IAI46_03315at 716.294 kb on - strand, within IAI46_03315at 716.294 kb on - strand, within IAI46_03315at 716.294 kb on - strand, within IAI46_03315at 716.314 kb on + strand, within IAI46_03315at 716.315 kb on - strand, within IAI46_03315at 716.355 kb on + strand, within IAI46_03315at 716.356 kb on - strand, within IAI46_03315at 716.395 kb on - strand, within IAI46_03315at 716.395 kb on - strand, within IAI46_03315at 716.487 kb on - strand, within IAI46_03315at 716.599 kb on + strandat 716.599 kb on + strandat 716.600 kb on - strandat 716.600 kb on - strandat 716.606 kb on - strandat 716.606 kb on - strandat 716.656 kb on - strandat 716.656 kb on - strandat 716.656 kb on - strandat 716.714 kb on + strandat 716.714 kb on + strandat 716.714 kb on + strandat 716.715 kb on - strandat 716.904 kb on + strandat 716.904 kb on + strandat 716.904 kb on + strandat 716.905 kb on - strandat 716.905 kb on - strandat 717.226 kb on + strand, within IAI46_03320at 717.227 kb on - strand, within IAI46_03320at 717.227 kb on - strand, within IAI46_03320at 717.240 kb on + strand, within IAI46_03320at 717.241 kb on - strand, within IAI46_03320at 717.256 kb on + strand, within IAI46_03320at 717.256 kb on + strand, within IAI46_03320at 717.257 kb on - strand, within IAI46_03320at 717.333 kb on + strand, within IAI46_03320at 717.334 kb on - strand, within IAI46_03320at 717.334 kb on - strand, within IAI46_03320at 717.336 kb on + strand, within IAI46_03320at 717.336 kb on + strand, within IAI46_03320at 717.336 kb on + strand, within IAI46_03320at 717.336 kb on + strand, within IAI46_03320at 717.444 kb on + strand, within IAI46_03320at 717.445 kb on - strand, within IAI46_03320at 717.475 kb on + strand, within IAI46_03320at 717.476 kb on - strand, within IAI46_03320at 717.476 kb on - strand, within IAI46_03320at 717.476 kb on - strand, within IAI46_03320at 717.545 kb on + strand, within IAI46_03320at 717.556 kb on - strand, within IAI46_03320at 717.629 kb on + strand, within IAI46_03320at 717.664 kb on + strand, within IAI46_03320

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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714,891 + IAI46_03310 0.48 -0.5
714,892 - IAI46_03310 0.48 +0.6
715,014 - IAI46_03310 0.56 +0.4
715,014 - IAI46_03310 0.56 -0.1
715,028 + IAI46_03310 0.57 +0.1
715,028 + IAI46_03310 0.57 +0.5
715,028 + IAI46_03310 0.57 +0.4
715,029 - IAI46_03310 0.57 -0.8
715,079 - IAI46_03310 0.60 +0.2
715,107 + IAI46_03310 0.62 +0.3
715,108 - IAI46_03310 0.62 +0.3
715,310 + IAI46_03310 0.74 +0.2
715,311 - IAI46_03310 0.75 +0.3
715,311 - IAI46_03310 0.75 +0.3
715,311 - IAI46_03310 0.75 +0.5
715,311 - IAI46_03310 0.75 +0.1
715,325 + IAI46_03310 0.75 -0.1
715,326 - IAI46_03310 0.75 +1.5
715,326 - IAI46_03310 0.75 -0.6
715,326 - IAI46_03310 0.75 +0.2
715,329 + IAI46_03310 0.76 -0.1
715,329 + IAI46_03310 0.76 +0.8
715,329 + IAI46_03310 0.76 +0.5
715,329 + IAI46_03310 0.76 +1.0
715,329 + IAI46_03310 0.76 +0.5
715,330 - IAI46_03310 0.76 -0.1
715,376 + IAI46_03310 0.79 +0.9
715,377 - IAI46_03310 0.79 +0.4
715,377 - IAI46_03310 0.79 +0.7
715,377 - IAI46_03310 0.79 -0.4
715,378 + IAI46_03310 0.79 -0.5
715,378 + IAI46_03310 0.79 +0.6
715,378 + IAI46_03310 0.79 +0.3
715,378 + IAI46_03310 0.79 +0.6
715,378 + IAI46_03310 0.79 -0.1
715,378 + IAI46_03310 0.79 -0.6
715,379 - IAI46_03310 0.79 +1.1
715,379 - IAI46_03310 0.79 +1.2
715,379 - IAI46_03310 0.79 -0.6
715,379 - IAI46_03310 0.79 -0.0
715,447 + IAI46_03310 0.83 +1.5
715,448 - IAI46_03310 0.83 +0.1
715,448 - IAI46_03310 0.83 +0.1
715,555 + IAI46_03310 0.90 +0.9
715,555 + IAI46_03310 0.90 +0.3
715,568 + +0.6
715,569 - +0.5
715,582 + +0.9
715,582 + -1.7
715,584 + +0.9
715,584 + -0.4
715,585 - +0.2
715,585 - +1.2
715,585 - -0.3
715,586 - +0.3
715,750 - -0.5
715,766 - -0.4
715,834 + IAI46_03315 0.14 +0.4
715,834 + IAI46_03315 0.14 +0.8
715,834 + IAI46_03315 0.14 +0.8
715,835 - IAI46_03315 0.14 +0.3
715,892 + IAI46_03315 0.20 -0.1
715,893 - IAI46_03315 0.20 +1.2
715,957 + IAI46_03315 0.27 -0.5
715,957 + IAI46_03315 0.27 -0.4
715,958 - IAI46_03315 0.27 +1.0
715,987 + IAI46_03315 0.30 -0.3
715,987 + IAI46_03315 0.30 +0.9
715,988 - IAI46_03315 0.30 -1.6
716,018 - IAI46_03315 0.33 +1.6
716,035 + IAI46_03315 0.34 -0.1
716,035 + IAI46_03315 0.34 -0.1
716,036 - IAI46_03315 0.35 +0.1
716,039 + IAI46_03315 0.35 +0.3
716,039 + IAI46_03315 0.35 -0.0
716,040 - IAI46_03315 0.35 -0.3
716,040 - IAI46_03315 0.35 +1.6
716,040 - IAI46_03315 0.35 +0.6
716,040 - IAI46_03315 0.35 +0.2
716,077 + IAI46_03315 0.39 +0.1
716,077 + IAI46_03315 0.39 +0.8
716,078 - IAI46_03315 0.39 +0.3
716,156 - IAI46_03315 0.47 +1.2
716,216 - IAI46_03315 0.53 -0.2
716,216 - IAI46_03315 0.53 -0.7
716,216 - IAI46_03315 0.53 +0.9
716,294 - IAI46_03315 0.61 -1.4
716,294 - IAI46_03315 0.61 +0.8
716,294 - IAI46_03315 0.61 -0.5
716,314 + IAI46_03315 0.63 +0.4
716,315 - IAI46_03315 0.63 -0.2
716,355 + IAI46_03315 0.67 +0.5
716,356 - IAI46_03315 0.67 +0.6
716,395 - IAI46_03315 0.71 +0.2
716,395 - IAI46_03315 0.71 +0.8
716,487 - IAI46_03315 0.80 +0.4
716,599 + -0.3
716,599 + +0.2
716,600 - +0.9
716,600 - +0.2
716,606 - +0.2
716,606 - -0.5
716,656 - -0.0
716,656 - -1.5
716,656 - +1.6
716,714 + +0.1
716,714 + +0.3
716,714 + -0.5
716,715 - -0.1
716,904 + +0.4
716,904 + -0.9
716,904 + +0.0
716,905 - +0.0
716,905 - -1.0
717,226 + IAI46_03320 0.19 +0.2
717,227 - IAI46_03320 0.19 -0.1
717,227 - IAI46_03320 0.19 +0.4
717,240 + IAI46_03320 0.20 -0.8
717,241 - IAI46_03320 0.20 +0.5
717,256 + IAI46_03320 0.21 -0.4
717,256 + IAI46_03320 0.21 +1.5
717,257 - IAI46_03320 0.21 -0.7
717,333 + IAI46_03320 0.26 -0.9
717,334 - IAI46_03320 0.26 -0.2
717,334 - IAI46_03320 0.26 -0.8
717,336 + IAI46_03320 0.26 +0.3
717,336 + IAI46_03320 0.26 -0.3
717,336 + IAI46_03320 0.26 -0.6
717,336 + IAI46_03320 0.26 -0.1
717,444 + IAI46_03320 0.33 +1.0
717,445 - IAI46_03320 0.33 -0.1
717,475 + IAI46_03320 0.34 +0.2
717,476 - IAI46_03320 0.34 +0.9
717,476 - IAI46_03320 0.34 +0.8
717,476 - IAI46_03320 0.34 -0.1
717,545 + IAI46_03320 0.39 -0.3
717,556 - IAI46_03320 0.39 +0.3
717,629 + IAI46_03320 0.44 -0.1
717,664 + IAI46_03320 0.46 +0.7

Or see this region's nucleotide sequence