Strain Fitness in Serratia liquefaciens MT49 around IAI46_03160

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_03155 and IAI46_03160 are separated by 2 nucleotidesIAI46_03160 and IAI46_03165 are separated by 34 nucleotides IAI46_03155: IAI46_03155 - dihydroxy-acid dehydratase, at 675,107 to 676,819 _03155 IAI46_03160: IAI46_03160 - MFS transporter, at 676,822 to 678,222 _03160 IAI46_03165: IAI46_03165 - sugar porter family MFS transporter, at 678,257 to 679,687 _03165 Position (kb) 676 677 678 679Strain fitness (log2 ratio) -2 -1 0 1 2at 675.887 kb on + strand, within IAI46_03155at 675.946 kb on - strand, within IAI46_03155at 676.002 kb on + strand, within IAI46_03155at 676.002 kb on + strand, within IAI46_03155at 676.002 kb on + strand, within IAI46_03155at 676.003 kb on - strand, within IAI46_03155at 676.003 kb on - strand, within IAI46_03155at 676.037 kb on - strand, within IAI46_03155at 676.065 kb on - strand, within IAI46_03155at 676.156 kb on + strand, within IAI46_03155at 676.157 kb on - strand, within IAI46_03155at 676.164 kb on - strand, within IAI46_03155at 676.200 kb on + strand, within IAI46_03155at 676.200 kb on + strand, within IAI46_03155at 676.201 kb on - strand, within IAI46_03155at 676.201 kb on - strand, within IAI46_03155at 676.201 kb on - strand, within IAI46_03155at 676.201 kb on - strand, within IAI46_03155at 676.204 kb on + strand, within IAI46_03155at 676.204 kb on + strand, within IAI46_03155at 676.204 kb on + strand, within IAI46_03155at 676.205 kb on - strand, within IAI46_03155at 676.205 kb on - strand, within IAI46_03155at 676.325 kb on - strand, within IAI46_03155at 676.325 kb on - strand, within IAI46_03155at 676.330 kb on + strand, within IAI46_03155at 676.331 kb on - strand, within IAI46_03155at 676.331 kb on - strand, within IAI46_03155at 676.332 kb on + strand, within IAI46_03155at 676.379 kb on - strand, within IAI46_03155at 676.379 kb on - strand, within IAI46_03155at 676.516 kb on - strand, within IAI46_03155at 676.516 kb on - strand, within IAI46_03155at 676.562 kb on - strand, within IAI46_03155at 676.610 kb on + strand, within IAI46_03155at 676.610 kb on + strand, within IAI46_03155at 676.610 kb on + strand, within IAI46_03155at 676.611 kb on - strand, within IAI46_03155at 676.660 kb on + strandat 676.660 kb on + strandat 676.661 kb on - strandat 676.661 kb on - strandat 676.661 kb on - strandat 676.661 kb on - strandat 676.662 kb on + strandat 676.662 kb on + strandat 676.663 kb on - strandat 676.663 kb on - strandat 676.663 kb on - strandat 676.726 kb on - strandat 676.823 kb on + strandat 676.840 kb on - strandat 676.844 kb on - strandat 677.123 kb on + strand, within IAI46_03160at 677.123 kb on + strand, within IAI46_03160at 677.123 kb on + strand, within IAI46_03160at 677.123 kb on + strand, within IAI46_03160at 677.124 kb on - strand, within IAI46_03160at 677.124 kb on - strand, within IAI46_03160at 677.128 kb on - strand, within IAI46_03160at 677.201 kb on + strand, within IAI46_03160at 677.202 kb on - strand, within IAI46_03160at 677.224 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.251 kb on - strand, within IAI46_03160at 677.297 kb on - strand, within IAI46_03160at 677.297 kb on - strand, within IAI46_03160at 677.301 kb on + strand, within IAI46_03160at 677.301 kb on + strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.302 kb on - strand, within IAI46_03160at 677.321 kb on + strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.322 kb on - strand, within IAI46_03160at 677.327 kb on - strand, within IAI46_03160at 677.408 kb on + strand, within IAI46_03160at 677.456 kb on + strand, within IAI46_03160at 677.456 kb on + strand, within IAI46_03160at 677.456 kb on + strand, within IAI46_03160at 677.614 kb on + strand, within IAI46_03160at 677.614 kb on + strand, within IAI46_03160at 677.630 kb on - strand, within IAI46_03160at 677.678 kb on - strand, within IAI46_03160at 677.678 kb on - strand, within IAI46_03160at 677.751 kb on + strand, within IAI46_03160at 677.752 kb on - strand, within IAI46_03160at 677.810 kb on - strand, within IAI46_03160at 677.813 kb on + strand, within IAI46_03160at 677.813 kb on + strand, within IAI46_03160at 677.814 kb on - strand, within IAI46_03160at 677.814 kb on - strand, within IAI46_03160at 677.869 kb on + strand, within IAI46_03160at 677.869 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.873 kb on + strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.874 kb on - strand, within IAI46_03160at 677.928 kb on + strand, within IAI46_03160at 678.020 kb on - strand, within IAI46_03160at 678.073 kb on - strand, within IAI46_03160at 678.110 kb on + strandat 678.122 kb on + strandat 678.122 kb on + strandat 678.168 kb on - strandat 678.246 kb on + strandat 678.246 kb on + strandat 678.247 kb on - strandat 678.286 kb on + strandat 678.286 kb on + strandat 678.311 kb on + strandat 678.312 kb on - strandat 678.312 kb on - strandat 678.313 kb on + strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.314 kb on - strandat 678.392 kb on + strandat 678.401 kb on + strand, within IAI46_03165at 678.410 kb on + strand, within IAI46_03165at 678.410 kb on + strand, within IAI46_03165at 678.410 kb on + strand, within IAI46_03165at 678.410 kb on + strand, within IAI46_03165at 678.411 kb on - strand, within IAI46_03165at 678.490 kb on + strand, within IAI46_03165at 678.490 kb on + strand, within IAI46_03165at 678.576 kb on - strand, within IAI46_03165at 678.611 kb on + strand, within IAI46_03165at 678.611 kb on + strand, within IAI46_03165at 678.611 kb on + strand, within IAI46_03165at 678.612 kb on - strand, within IAI46_03165at 678.612 kb on - strand, within IAI46_03165at 678.616 kb on + strand, within IAI46_03165at 678.646 kb on - strand, within IAI46_03165at 678.646 kb on - strand, within IAI46_03165at 678.646 kb on - strand, within IAI46_03165at 678.675 kb on + strand, within IAI46_03165at 678.675 kb on + strand, within IAI46_03165at 678.675 kb on + strand, within IAI46_03165at 678.676 kb on - strand, within IAI46_03165at 678.682 kb on + strand, within IAI46_03165at 678.682 kb on + strand, within IAI46_03165at 678.683 kb on - strand, within IAI46_03165at 678.683 kb on - strand, within IAI46_03165at 678.684 kb on + strand, within IAI46_03165at 678.684 kb on + strand, within IAI46_03165at 678.685 kb on - strand, within IAI46_03165at 678.685 kb on - strand, within IAI46_03165at 678.685 kb on - strand, within IAI46_03165at 678.743 kb on - strand, within IAI46_03165at 678.775 kb on + strand, within IAI46_03165at 678.806 kb on + strand, within IAI46_03165at 678.874 kb on - strand, within IAI46_03165at 678.876 kb on + strand, within IAI46_03165at 678.876 kb on + strand, within IAI46_03165at 678.876 kb on + strand, within IAI46_03165at 678.877 kb on - strand, within IAI46_03165at 678.910 kb on + strand, within IAI46_03165at 678.910 kb on + strand, within IAI46_03165at 678.910 kb on + strand, within IAI46_03165at 678.934 kb on - strand, within IAI46_03165at 679.049 kb on + strand, within IAI46_03165at 679.127 kb on + strand, within IAI46_03165at 679.128 kb on - strand, within IAI46_03165at 679.128 kb on - strand, within IAI46_03165at 679.136 kb on - strand, within IAI46_03165at 679.140 kb on - strand, within IAI46_03165at 679.140 kb on - strand, within IAI46_03165

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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675,887 + IAI46_03155 0.46 +0.0
675,946 - IAI46_03155 0.49 -0.2
676,002 + IAI46_03155 0.52 +0.5
676,002 + IAI46_03155 0.52 +0.9
676,002 + IAI46_03155 0.52 +0.0
676,003 - IAI46_03155 0.52 +1.0
676,003 - IAI46_03155 0.52 +0.6
676,037 - IAI46_03155 0.54 +0.6
676,065 - IAI46_03155 0.56 +0.4
676,156 + IAI46_03155 0.61 -0.5
676,157 - IAI46_03155 0.61 +0.2
676,164 - IAI46_03155 0.62 +0.3
676,200 + IAI46_03155 0.64 -0.7
676,200 + IAI46_03155 0.64 -0.3
676,201 - IAI46_03155 0.64 +1.5
676,201 - IAI46_03155 0.64 -1.5
676,201 - IAI46_03155 0.64 +0.8
676,201 - IAI46_03155 0.64 -0.9
676,204 + IAI46_03155 0.64 -0.4
676,204 + IAI46_03155 0.64 -0.3
676,204 + IAI46_03155 0.64 -0.1
676,205 - IAI46_03155 0.64 -0.2
676,205 - IAI46_03155 0.64 -0.4
676,325 - IAI46_03155 0.71 +0.1
676,325 - IAI46_03155 0.71 +0.3
676,330 + IAI46_03155 0.71 +0.2
676,331 - IAI46_03155 0.71 +0.3
676,331 - IAI46_03155 0.71 +0.2
676,332 + IAI46_03155 0.72 +0.3
676,379 - IAI46_03155 0.74 +0.2
676,379 - IAI46_03155 0.74 +0.6
676,516 - IAI46_03155 0.82 -0.5
676,516 - IAI46_03155 0.82 -0.1
676,562 - IAI46_03155 0.85 -0.1
676,610 + IAI46_03155 0.88 +0.1
676,610 + IAI46_03155 0.88 -0.4
676,610 + IAI46_03155 0.88 -0.5
676,611 - IAI46_03155 0.88 +0.3
676,660 + +0.4
676,660 + -0.8
676,661 - -0.2
676,661 - +0.1
676,661 - -0.2
676,661 - -0.1
676,662 + +1.2
676,662 + -0.6
676,663 - -0.4
676,663 - -0.1
676,663 - -0.6
676,726 - -0.0
676,823 + -0.0
676,840 - +2.0
676,844 - +0.3
677,123 + IAI46_03160 0.21 +0.3
677,123 + IAI46_03160 0.21 -1.3
677,123 + IAI46_03160 0.21 +0.3
677,123 + IAI46_03160 0.21 +0.6
677,124 - IAI46_03160 0.22 +1.1
677,124 - IAI46_03160 0.22 +0.4
677,128 - IAI46_03160 0.22 -1.0
677,201 + IAI46_03160 0.27 -0.0
677,202 - IAI46_03160 0.27 -0.3
677,224 - IAI46_03160 0.29 -0.0
677,251 - IAI46_03160 0.31 +0.3
677,251 - IAI46_03160 0.31 +0.6
677,251 - IAI46_03160 0.31 +0.1
677,251 - IAI46_03160 0.31 -0.2
677,251 - IAI46_03160 0.31 +0.1
677,297 - IAI46_03160 0.34 +0.3
677,297 - IAI46_03160 0.34 +0.4
677,301 + IAI46_03160 0.34 +0.5
677,301 + IAI46_03160 0.34 -0.1
677,302 - IAI46_03160 0.34 -0.3
677,302 - IAI46_03160 0.34 -0.1
677,302 - IAI46_03160 0.34 -0.2
677,302 - IAI46_03160 0.34 -0.4
677,302 - IAI46_03160 0.34 -1.5
677,321 + IAI46_03160 0.36 +0.4
677,322 - IAI46_03160 0.36 +0.5
677,322 - IAI46_03160 0.36 -0.5
677,322 - IAI46_03160 0.36 +0.4
677,322 - IAI46_03160 0.36 +0.6
677,327 - IAI46_03160 0.36 -0.5
677,408 + IAI46_03160 0.42 +0.1
677,456 + IAI46_03160 0.45 -0.4
677,456 + IAI46_03160 0.45 +1.1
677,456 + IAI46_03160 0.45 +0.4
677,614 + IAI46_03160 0.57 +0.3
677,614 + IAI46_03160 0.57 +0.6
677,630 - IAI46_03160 0.58 +0.9
677,678 - IAI46_03160 0.61 -0.5
677,678 - IAI46_03160 0.61 +0.8
677,751 + IAI46_03160 0.66 +0.2
677,752 - IAI46_03160 0.66 -0.5
677,810 - IAI46_03160 0.71 -0.4
677,813 + IAI46_03160 0.71 +1.1
677,813 + IAI46_03160 0.71 +0.6
677,814 - IAI46_03160 0.71 +0.9
677,814 - IAI46_03160 0.71 -1.6
677,869 + IAI46_03160 0.75 +0.6
677,869 + IAI46_03160 0.75 -0.8
677,873 + IAI46_03160 0.75 +0.2
677,873 + IAI46_03160 0.75 +1.1
677,873 + IAI46_03160 0.75 +0.1
677,873 + IAI46_03160 0.75 -0.9
677,873 + IAI46_03160 0.75 -0.5
677,873 + IAI46_03160 0.75 +0.4
677,873 + IAI46_03160 0.75 -0.0
677,873 + IAI46_03160 0.75 +0.5
677,873 + IAI46_03160 0.75 -0.2
677,874 - IAI46_03160 0.75 +0.5
677,874 - IAI46_03160 0.75 -0.3
677,874 - IAI46_03160 0.75 +0.8
677,874 - IAI46_03160 0.75 -0.1
677,874 - IAI46_03160 0.75 -0.1
677,928 + IAI46_03160 0.79 -0.4
678,020 - IAI46_03160 0.86 +0.1
678,073 - IAI46_03160 0.89 +0.9
678,110 + -0.2
678,122 + -0.3
678,122 + +0.5
678,168 - -0.1
678,246 + -0.5
678,246 + +0.2
678,247 - -0.6
678,286 + +0.7
678,286 + +0.3
678,311 + +0.3
678,312 - +0.3
678,312 - +0.1
678,313 + +0.3
678,314 - +0.6
678,314 - -0.4
678,314 - +0.6
678,392 + +0.8
678,401 + IAI46_03165 0.10 +0.3
678,410 + IAI46_03165 0.11 +0.6
678,410 + IAI46_03165 0.11 +0.3
678,410 + IAI46_03165 0.11 +0.4
678,410 + IAI46_03165 0.11 -0.0
678,411 - IAI46_03165 0.11 +1.2
678,490 + IAI46_03165 0.16 +0.3
678,490 + IAI46_03165 0.16 +0.4
678,576 - IAI46_03165 0.22 +0.0
678,611 + IAI46_03165 0.25 -0.9
678,611 + IAI46_03165 0.25 -0.2
678,611 + IAI46_03165 0.25 -0.4
678,612 - IAI46_03165 0.25 -0.2
678,612 - IAI46_03165 0.25 +0.7
678,616 + IAI46_03165 0.25 +0.1
678,646 - IAI46_03165 0.27 +0.2
678,646 - IAI46_03165 0.27 +0.0
678,646 - IAI46_03165 0.27 -0.4
678,675 + IAI46_03165 0.29 -0.2
678,675 + IAI46_03165 0.29 -0.0
678,675 + IAI46_03165 0.29 +0.0
678,676 - IAI46_03165 0.29 +0.9
678,682 + IAI46_03165 0.30 +0.1
678,682 + IAI46_03165 0.30 -0.4
678,683 - IAI46_03165 0.30 +0.7
678,683 - IAI46_03165 0.30 -0.3
678,684 + IAI46_03165 0.30 -0.1
678,684 + IAI46_03165 0.30 -0.1
678,685 - IAI46_03165 0.30 -0.2
678,685 - IAI46_03165 0.30 -0.4
678,685 - IAI46_03165 0.30 +0.2
678,743 - IAI46_03165 0.34 +0.4
678,775 + IAI46_03165 0.36 +0.0
678,806 + IAI46_03165 0.38 +0.6
678,874 - IAI46_03165 0.43 +0.2
678,876 + IAI46_03165 0.43 +0.4
678,876 + IAI46_03165 0.43 +0.3
678,876 + IAI46_03165 0.43 +0.9
678,877 - IAI46_03165 0.43 -0.7
678,910 + IAI46_03165 0.46 +0.0
678,910 + IAI46_03165 0.46 +1.0
678,910 + IAI46_03165 0.46 +0.3
678,934 - IAI46_03165 0.47 -0.9
679,049 + IAI46_03165 0.55 -2.0
679,127 + IAI46_03165 0.61 +1.5
679,128 - IAI46_03165 0.61 -0.4
679,128 - IAI46_03165 0.61 +0.4
679,136 - IAI46_03165 0.61 -1.1
679,140 - IAI46_03165 0.62 +0.1
679,140 - IAI46_03165 0.62 +1.3

Or see this region's nucleotide sequence