Strain Fitness in Serratia liquefaciens MT49 around IAI46_02675

Experiment: No stress control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02665 and IAI46_02670 are separated by 21 nucleotidesIAI46_02670 and IAI46_02675 are separated by 40 nucleotidesIAI46_02675 and IAI46_02680 are separated by 86 nucleotides IAI46_02665: IAI46_02665 - FAD-binding oxidoreductase, at 575,949 to 577,250 _02665 IAI46_02670: IAI46_02670 - DUF861 domain-containing protein, at 577,272 to 577,637 _02670 IAI46_02675: IAI46_02675 - alpha/beta hydrolase, at 577,678 to 578,484 _02675 IAI46_02680: IAI46_02680 - class II histone deacetylase, at 578,571 to 579,683 _02680 Position (kb) 577 578 579Strain fitness (log2 ratio) -2 -1 0 1 2at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.713 kb on + strand, within IAI46_02665at 576.714 kb on - strand, within IAI46_02665at 576.714 kb on - strand, within IAI46_02665at 576.714 kb on - strand, within IAI46_02665at 576.718 kb on - strand, within IAI46_02665at 576.789 kb on + strand, within IAI46_02665at 576.789 kb on + strand, within IAI46_02665at 576.817 kb on - strand, within IAI46_02665at 576.894 kb on - strand, within IAI46_02665at 577.050 kb on + strand, within IAI46_02665at 577.079 kb on + strand, within IAI46_02665at 577.080 kb on - strand, within IAI46_02665at 577.128 kb on + strandat 577.160 kb on + strandat 577.160 kb on + strandat 577.160 kb on + strandat 577.161 kb on - strandat 577.282 kb on + strandat 577.282 kb on + strandat 577.283 kb on - strandat 577.283 kb on - strandat 577.289 kb on + strandat 577.289 kb on + strandat 577.290 kb on - strandat 577.490 kb on + strand, within IAI46_02670at 577.490 kb on + strand, within IAI46_02670at 577.490 kb on + strand, within IAI46_02670at 577.534 kb on - strand, within IAI46_02670at 577.534 kb on - strand, within IAI46_02670at 577.577 kb on - strand, within IAI46_02670at 577.614 kb on + strandat 577.642 kb on + strandat 577.680 kb on - strandat 577.698 kb on + strandat 577.717 kb on + strandat 577.717 kb on + strandat 577.718 kb on - strandat 577.718 kb on - strandat 577.720 kb on + strandat 577.720 kb on + strandat 577.720 kb on + strandat 577.721 kb on - strandat 577.721 kb on - strandat 577.858 kb on + strand, within IAI46_02675at 577.859 kb on - strand, within IAI46_02675at 577.870 kb on - strand, within IAI46_02675at 578.052 kb on + strand, within IAI46_02675at 578.052 kb on + strand, within IAI46_02675at 578.052 kb on + strand, within IAI46_02675at 578.053 kb on - strand, within IAI46_02675at 578.138 kb on + strand, within IAI46_02675at 578.221 kb on + strand, within IAI46_02675at 578.222 kb on - strand, within IAI46_02675at 578.229 kb on + strand, within IAI46_02675at 578.230 kb on - strand, within IAI46_02675at 578.253 kb on - strand, within IAI46_02675at 578.352 kb on - strand, within IAI46_02675at 578.357 kb on + strand, within IAI46_02675at 578.460 kb on + strandat 578.461 kb on - strandat 578.487 kb on + strandat 578.487 kb on + strandat 578.488 kb on - strandat 578.509 kb on + strandat 578.510 kb on - strandat 578.572 kb on + strandat 578.572 kb on + strandat 578.734 kb on + strand, within IAI46_02680at 578.734 kb on + strand, within IAI46_02680at 578.734 kb on + strand, within IAI46_02680at 578.734 kb on + strand, within IAI46_02680at 578.735 kb on - strand, within IAI46_02680at 578.937 kb on + strand, within IAI46_02680at 578.937 kb on + strand, within IAI46_02680at 578.937 kb on + strand, within IAI46_02680at 578.937 kb on + strand, within IAI46_02680at 578.938 kb on - strand, within IAI46_02680at 578.938 kb on - strand, within IAI46_02680at 578.938 kb on - strand, within IAI46_02680at 578.954 kb on - strand, within IAI46_02680at 578.954 kb on - strand, within IAI46_02680at 578.954 kb on - strand, within IAI46_02680at 578.954 kb on - strand, within IAI46_02680at 579.002 kb on + strand, within IAI46_02680at 579.002 kb on + strand, within IAI46_02680at 579.002 kb on + strand, within IAI46_02680at 579.003 kb on - strand, within IAI46_02680at 579.090 kb on + strand, within IAI46_02680at 579.090 kb on + strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.091 kb on - strand, within IAI46_02680at 579.109 kb on + strand, within IAI46_02680at 579.109 kb on + strand, within IAI46_02680at 579.109 kb on + strand, within IAI46_02680at 579.109 kb on + strand, within IAI46_02680at 579.110 kb on - strand, within IAI46_02680at 579.110 kb on - strand, within IAI46_02680at 579.110 kb on - strand, within IAI46_02680at 579.113 kb on + strand, within IAI46_02680at 579.113 kb on + strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.114 kb on - strand, within IAI46_02680at 579.122 kb on + strand, within IAI46_02680at 579.123 kb on - strand, within IAI46_02680at 579.123 kb on - strand, within IAI46_02680at 579.176 kb on - strand, within IAI46_02680at 579.176 kb on - strand, within IAI46_02680at 579.176 kb on - strand, within IAI46_02680at 579.209 kb on + strand, within IAI46_02680at 579.280 kb on + strand, within IAI46_02680at 579.281 kb on - strand, within IAI46_02680at 579.358 kb on + strand, within IAI46_02680at 579.358 kb on + strand, within IAI46_02680at 579.358 kb on + strand, within IAI46_02680at 579.359 kb on - strand, within IAI46_02680at 579.414 kb on + strand, within IAI46_02680at 579.414 kb on + strand, within IAI46_02680at 579.414 kb on + strand, within IAI46_02680at 579.414 kb on + strand, within IAI46_02680at 579.415 kb on - strand, within IAI46_02680at 579.415 kb on - strand, within IAI46_02680at 579.415 kb on - strand, within IAI46_02680at 579.415 kb on - strand, within IAI46_02680at 579.457 kb on - strand, within IAI46_02680

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Per-strain Table

Position Strand Gene LocusTag Fraction No stress control, aerobic
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576,713 + IAI46_02665 0.59 +0.6
576,713 + IAI46_02665 0.59 +0.7
576,713 + IAI46_02665 0.59 +0.1
576,713 + IAI46_02665 0.59 -0.6
576,713 + IAI46_02665 0.59 -0.8
576,713 + IAI46_02665 0.59 -2.6
576,713 + IAI46_02665 0.59 +0.5
576,714 - IAI46_02665 0.59 +0.2
576,714 - IAI46_02665 0.59 -0.1
576,714 - IAI46_02665 0.59 -0.5
576,718 - IAI46_02665 0.59 +0.2
576,789 + IAI46_02665 0.65 +2.1
576,789 + IAI46_02665 0.65 -0.4
576,817 - IAI46_02665 0.67 +0.1
576,894 - IAI46_02665 0.73 -0.5
577,050 + IAI46_02665 0.85 +0.4
577,079 + IAI46_02665 0.87 +0.7
577,080 - IAI46_02665 0.87 +0.9
577,128 + +0.5
577,160 + +0.4
577,160 + +0.5
577,160 + -0.1
577,161 - +0.5
577,282 + +0.2
577,282 + -0.4
577,283 - +0.4
577,283 - -0.3
577,289 + +1.7
577,289 + +0.4
577,290 - -0.9
577,490 + IAI46_02670 0.60 +0.1
577,490 + IAI46_02670 0.60 +0.1
577,490 + IAI46_02670 0.60 -0.9
577,534 - IAI46_02670 0.72 +0.7
577,534 - IAI46_02670 0.72 -0.0
577,577 - IAI46_02670 0.83 -0.8
577,614 + -0.6
577,642 + +1.2
577,680 - +0.5
577,698 + -1.1
577,717 + +0.5
577,717 + -0.2
577,718 - +0.9
577,718 - -0.1
577,720 + -0.8
577,720 + -0.2
577,720 + -0.5
577,721 - -2.2
577,721 - -0.4
577,858 + IAI46_02675 0.22 +0.2
577,859 - IAI46_02675 0.22 -0.2
577,870 - IAI46_02675 0.24 -0.1
578,052 + IAI46_02675 0.46 +0.1
578,052 + IAI46_02675 0.46 +0.3
578,052 + IAI46_02675 0.46 +0.1
578,053 - IAI46_02675 0.46 -0.5
578,138 + IAI46_02675 0.57 +0.9
578,221 + IAI46_02675 0.67 -0.8
578,222 - IAI46_02675 0.67 -0.1
578,229 + IAI46_02675 0.68 +0.6
578,230 - IAI46_02675 0.68 -1.2
578,253 - IAI46_02675 0.71 +0.3
578,352 - IAI46_02675 0.84 +0.3
578,357 + IAI46_02675 0.84 +1.2
578,460 + -0.7
578,461 - -0.6
578,487 + +0.1
578,487 + +0.2
578,488 - -0.2
578,509 + +0.5
578,510 - -0.9
578,572 + -0.5
578,572 + +0.3
578,734 + IAI46_02680 0.15 +1.1
578,734 + IAI46_02680 0.15 +0.2
578,734 + IAI46_02680 0.15 +0.7
578,734 + IAI46_02680 0.15 +0.4
578,735 - IAI46_02680 0.15 +0.7
578,937 + IAI46_02680 0.33 -0.8
578,937 + IAI46_02680 0.33 +1.1
578,937 + IAI46_02680 0.33 -0.8
578,937 + IAI46_02680 0.33 -1.6
578,938 - IAI46_02680 0.33 +1.1
578,938 - IAI46_02680 0.33 +0.2
578,938 - IAI46_02680 0.33 -0.8
578,954 - IAI46_02680 0.34 +0.0
578,954 - IAI46_02680 0.34 +0.2
578,954 - IAI46_02680 0.34 +0.3
578,954 - IAI46_02680 0.34 -0.5
579,002 + IAI46_02680 0.39 -0.8
579,002 + IAI46_02680 0.39 +0.5
579,002 + IAI46_02680 0.39 +0.0
579,003 - IAI46_02680 0.39 -0.4
579,090 + IAI46_02680 0.47 +0.8
579,090 + IAI46_02680 0.47 -0.1
579,091 - IAI46_02680 0.47 +0.8
579,091 - IAI46_02680 0.47 +0.8
579,091 - IAI46_02680 0.47 +0.9
579,091 - IAI46_02680 0.47 +1.4
579,091 - IAI46_02680 0.47 -0.0
579,109 + IAI46_02680 0.48 +0.4
579,109 + IAI46_02680 0.48 +1.9
579,109 + IAI46_02680 0.48 +0.7
579,109 + IAI46_02680 0.48 +0.5
579,110 - IAI46_02680 0.48 +0.5
579,110 - IAI46_02680 0.48 +0.1
579,110 - IAI46_02680 0.48 -1.3
579,113 + IAI46_02680 0.49 -0.4
579,113 + IAI46_02680 0.49 +0.0
579,114 - IAI46_02680 0.49 +1.1
579,114 - IAI46_02680 0.49 -0.5
579,114 - IAI46_02680 0.49 +2.0
579,114 - IAI46_02680 0.49 -0.3
579,114 - IAI46_02680 0.49 +0.0
579,122 + IAI46_02680 0.50 +0.8
579,123 - IAI46_02680 0.50 +0.7
579,123 - IAI46_02680 0.50 -0.3
579,176 - IAI46_02680 0.54 -0.1
579,176 - IAI46_02680 0.54 -0.0
579,176 - IAI46_02680 0.54 +0.8
579,209 + IAI46_02680 0.57 +0.4
579,280 + IAI46_02680 0.64 -0.0
579,281 - IAI46_02680 0.64 +0.2
579,358 + IAI46_02680 0.71 +0.9
579,358 + IAI46_02680 0.71 -0.5
579,358 + IAI46_02680 0.71 -0.5
579,359 - IAI46_02680 0.71 +0.1
579,414 + IAI46_02680 0.76 -0.3
579,414 + IAI46_02680 0.76 +0.0
579,414 + IAI46_02680 0.76 +0.2
579,414 + IAI46_02680 0.76 +1.0
579,415 - IAI46_02680 0.76 -0.0
579,415 - IAI46_02680 0.76 +0.5
579,415 - IAI46_02680 0.76 -0.0
579,415 - IAI46_02680 0.76 +0.7
579,457 - IAI46_02680 0.80 -2.1

Or see this region's nucleotide sequence