Experiment: m.b. Polymyxin B sulfate 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4607 and Echvi_4608 overlap by 1 nucleotides Echvi_4608 and Echvi_4609 are separated by 97 nucleotides Echvi_4609 and Echvi_4610 are separated by 455 nucleotides
Echvi_4607: Echvi_4607 - Uncharacterized protein conserved in bacteria, at 5,515,769 to 5,516,602
_4607
Echvi_4608: Echvi_4608 - RNA polymerase sigma factor, sigma-70 family, at 5,516,602 to 5,517,135
_4608
Echvi_4609: Echvi_4609 - dihydrolipoamide dehydrogenase, at 5,517,233 to 5,518,630
_4609
Echvi_4610: Echvi_4610 - 3-oxoacyl-(acyl-carrier-protein) reductase, at 5,519,086 to 5,519,832
_4610
Position (kb) 5517
5518
5519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5516.309 kb on + strand, within Echvi_4607 at 5516.310 kb on - strand, within Echvi_4607 at 5516.412 kb on - strand, within Echvi_4607 at 5516.573 kb on - strand at 5516.587 kb on - strand at 5516.614 kb on - strand at 5516.614 kb on - strand at 5516.616 kb on + strand at 5516.708 kb on + strand, within Echvi_4608 at 5516.791 kb on + strand, within Echvi_4608 at 5516.791 kb on + strand, within Echvi_4608 at 5516.791 kb on + strand, within Echvi_4608 at 5516.792 kb on - strand, within Echvi_4608 at 5516.792 kb on - strand, within Echvi_4608 at 5516.831 kb on - strand, within Echvi_4608 at 5516.831 kb on - strand, within Echvi_4608 at 5516.831 kb on - strand, within Echvi_4608 at 5516.831 kb on - strand, within Echvi_4608 at 5516.831 kb on - strand, within Echvi_4608 at 5516.834 kb on + strand, within Echvi_4608 at 5516.834 kb on + strand, within Echvi_4608 at 5516.834 kb on + strand, within Echvi_4608 at 5516.834 kb on + strand, within Echvi_4608 at 5516.834 kb on + strand, within Echvi_4608 at 5516.835 kb on - strand, within Echvi_4608 at 5516.835 kb on - strand, within Echvi_4608 at 5516.835 kb on - strand, within Echvi_4608 at 5516.835 kb on - strand, within Echvi_4608 at 5516.848 kb on - strand, within Echvi_4608 at 5516.856 kb on + strand, within Echvi_4608 at 5516.856 kb on + strand, within Echvi_4608 at 5516.857 kb on - strand, within Echvi_4608 at 5516.930 kb on + strand, within Echvi_4608 at 5516.931 kb on - strand, within Echvi_4608 at 5516.931 kb on - strand, within Echvi_4608 at 5516.954 kb on + strand, within Echvi_4608 at 5516.954 kb on + strand, within Echvi_4608 at 5516.954 kb on + strand, within Echvi_4608 at 5516.954 kb on + strand, within Echvi_4608 at 5516.955 kb on - strand, within Echvi_4608 at 5516.955 kb on - strand, within Echvi_4608 at 5516.955 kb on - strand, within Echvi_4608 at 5516.955 kb on - strand, within Echvi_4608 at 5516.959 kb on - strand, within Echvi_4608 at 5517.028 kb on + strand, within Echvi_4608 at 5517.039 kb on + strand, within Echvi_4608 at 5517.040 kb on - strand, within Echvi_4608 at 5517.040 kb on - strand, within Echvi_4608 at 5517.040 kb on - strand, within Echvi_4608 at 5517.040 kb on - strand, within Echvi_4608 at 5517.077 kb on + strand, within Echvi_4608 at 5517.077 kb on + strand, within Echvi_4608 at 5517.078 kb on - strand, within Echvi_4608 at 5517.099 kb on + strand at 5517.107 kb on - strand at 5517.152 kb on + strand at 5517.153 kb on - strand at 5517.211 kb on + strand at 5518.650 kb on - strand at 5518.659 kb on - strand at 5518.818 kb on - strand at 5518.818 kb on - strand at 5518.818 kb on - strand at 5518.834 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml remove 5,516,309 + Echvi_4607 0.65 -2.3 5,516,310 - Echvi_4607 0.65 +0.3 5,516,412 - Echvi_4607 0.77 -2.1 5,516,573 - -2.6 5,516,587 - -1.0 5,516,614 - +0.9 5,516,614 - -1.2 5,516,616 + -0.2 5,516,708 + Echvi_4608 0.20 -1.1 5,516,791 + Echvi_4608 0.35 -0.2 5,516,791 + Echvi_4608 0.35 -0.4 5,516,791 + Echvi_4608 0.35 -0.1 5,516,792 - Echvi_4608 0.36 +0.9 5,516,792 - Echvi_4608 0.36 +1.1 5,516,831 - Echvi_4608 0.43 +0.2 5,516,831 - Echvi_4608 0.43 -1.5 5,516,831 - Echvi_4608 0.43 -0.5 5,516,831 - Echvi_4608 0.43 -0.6 5,516,831 - Echvi_4608 0.43 -1.0 5,516,834 + Echvi_4608 0.43 +0.5 5,516,834 + Echvi_4608 0.43 -1.3 5,516,834 + Echvi_4608 0.43 +0.7 5,516,834 + Echvi_4608 0.43 -0.4 5,516,834 + Echvi_4608 0.43 +0.0 5,516,835 - Echvi_4608 0.44 -0.6 5,516,835 - Echvi_4608 0.44 -0.7 5,516,835 - Echvi_4608 0.44 +1.5 5,516,835 - Echvi_4608 0.44 -1.4 5,516,848 - Echvi_4608 0.46 +0.3 5,516,856 + Echvi_4608 0.48 +0.1 5,516,856 + Echvi_4608 0.48 -0.4 5,516,857 - Echvi_4608 0.48 -0.6 5,516,930 + Echvi_4608 0.61 +2.4 5,516,931 - Echvi_4608 0.62 +0.1 5,516,931 - Echvi_4608 0.62 +0.7 5,516,954 + Echvi_4608 0.66 -0.7 5,516,954 + Echvi_4608 0.66 -1.4 5,516,954 + Echvi_4608 0.66 -1.0 5,516,954 + Echvi_4608 0.66 +1.3 5,516,955 - Echvi_4608 0.66 -1.7 5,516,955 - Echvi_4608 0.66 +1.5 5,516,955 - Echvi_4608 0.66 -0.6 5,516,955 - Echvi_4608 0.66 +1.0 5,516,959 - Echvi_4608 0.67 +0.9 5,517,028 + Echvi_4608 0.80 +0.1 5,517,039 + Echvi_4608 0.82 -0.5 5,517,040 - Echvi_4608 0.82 +0.3 5,517,040 - Echvi_4608 0.82 +0.2 5,517,040 - Echvi_4608 0.82 +0.0 5,517,040 - Echvi_4608 0.82 +1.3 5,517,077 + Echvi_4608 0.89 -0.9 5,517,077 + Echvi_4608 0.89 +1.5 5,517,078 - Echvi_4608 0.89 -0.1 5,517,099 + -1.1 5,517,107 - +0.1 5,517,152 + +1.3 5,517,153 - -0.1 5,517,211 + +0.3 5,518,650 - -1.4 5,518,659 - +0.9 5,518,818 - -0.3 5,518,818 - +0.0 5,518,818 - -0.3 5,518,834 + +0.1
Or see this region's nucleotide sequence