Experiment: m.b. Polymyxin B sulfate 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2832 and Echvi_2833 are separated by 158 nucleotides Echvi_2833 and Echvi_2834 are separated by 9 nucleotides Echvi_2834 and Echvi_2835 are separated by 11 nucleotides
Echvi_2832: Echvi_2832 - Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, at 3,392,783 to 3,393,610
_2832
Echvi_2833: Echvi_2833 - L-serine dehydratase, iron-sulfur-dependent, beta subunit, at 3,393,769 to 3,394,446
_2833
Echvi_2834: Echvi_2834 - Outer membrane protein, at 3,394,456 to 3,395,802
_2834
Echvi_2835: Echvi_2835 - RND family efflux transporter, MFP subunit, at 3,395,814 to 3,397,100
_2835
Position (kb)
3394
3395
3396 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3393.656 kb on + strand at 3393.681 kb on + strand at 3393.692 kb on + strand at 3393.704 kb on + strand at 3393.725 kb on + strand at 3393.725 kb on + strand at 3393.725 kb on + strand at 3393.732 kb on + strand at 3393.738 kb on - strand at 3393.742 kb on + strand at 3393.742 kb on + strand at 3393.742 kb on + strand at 3393.757 kb on + strand at 3393.758 kb on - strand at 3393.768 kb on + strand at 3393.769 kb on - strand at 3393.934 kb on + strand, within Echvi_2833 at 3393.934 kb on + strand, within Echvi_2833 at 3393.934 kb on + strand, within Echvi_2833 at 3393.935 kb on - strand, within Echvi_2833 at 3394.048 kb on - strand, within Echvi_2833 at 3394.127 kb on + strand, within Echvi_2833 at 3394.128 kb on - strand, within Echvi_2833 at 3394.167 kb on + strand, within Echvi_2833 at 3394.263 kb on + strand, within Echvi_2833 at 3394.368 kb on + strand, within Echvi_2833 at 3394.383 kb on + strand at 3394.388 kb on - strand at 3394.399 kb on - strand at 3394.424 kb on - strand at 3394.424 kb on - strand at 3394.424 kb on - strand at 3394.442 kb on + strand at 3394.442 kb on + strand at 3394.443 kb on - strand at 3394.450 kb on + strand at 3394.455 kb on + strand at 3394.481 kb on + strand at 3394.524 kb on + strand at 3394.533 kb on + strand at 3394.534 kb on - strand at 3394.534 kb on - strand at 3394.551 kb on + strand at 3394.625 kb on + strand, within Echvi_2834 at 3394.626 kb on - strand, within Echvi_2834 at 3394.641 kb on + strand, within Echvi_2834 at 3394.641 kb on + strand, within Echvi_2834 at 3394.681 kb on + strand, within Echvi_2834 at 3394.682 kb on - strand, within Echvi_2834 at 3394.683 kb on + strand, within Echvi_2834 at 3394.684 kb on - strand, within Echvi_2834 at 3394.684 kb on - strand, within Echvi_2834 at 3394.684 kb on - strand, within Echvi_2834 at 3394.775 kb on + strand, within Echvi_2834 at 3394.775 kb on + strand, within Echvi_2834 at 3394.775 kb on + strand, within Echvi_2834 at 3394.775 kb on + strand, within Echvi_2834 at 3394.775 kb on + strand, within Echvi_2834 at 3394.775 kb on + strand, within Echvi_2834 at 3394.776 kb on - strand, within Echvi_2834 at 3394.776 kb on - strand, within Echvi_2834 at 3394.776 kb on - strand, within Echvi_2834 at 3394.776 kb on - strand, within Echvi_2834 at 3394.776 kb on - strand, within Echvi_2834 at 3394.776 kb on - strand, within Echvi_2834 at 3394.776 kb on - strand, within Echvi_2834 at 3394.777 kb on + strand, within Echvi_2834 at 3394.777 kb on + strand, within Echvi_2834 at 3394.777 kb on + strand, within Echvi_2834 at 3394.778 kb on - strand, within Echvi_2834 at 3394.797 kb on + strand, within Echvi_2834 at 3394.797 kb on + strand, within Echvi_2834 at 3394.798 kb on - strand, within Echvi_2834 at 3394.866 kb on + strand, within Echvi_2834 at 3394.866 kb on + strand, within Echvi_2834 at 3394.866 kb on + strand, within Echvi_2834 at 3394.867 kb on - strand, within Echvi_2834 at 3394.870 kb on - strand, within Echvi_2834 at 3394.901 kb on + strand, within Echvi_2834 at 3394.922 kb on + strand, within Echvi_2834 at 3395.117 kb on + strand, within Echvi_2834 at 3395.117 kb on + strand, within Echvi_2834 at 3395.170 kb on + strand, within Echvi_2834 at 3395.171 kb on - strand, within Echvi_2834 at 3395.171 kb on - strand, within Echvi_2834 at 3395.171 kb on - strand, within Echvi_2834 at 3395.172 kb on + strand, within Echvi_2834 at 3395.172 kb on + strand, within Echvi_2834 at 3395.270 kb on - strand, within Echvi_2834 at 3395.270 kb on - strand, within Echvi_2834 at 3395.270 kb on - strand, within Echvi_2834 at 3395.277 kb on - strand, within Echvi_2834 at 3395.316 kb on - strand, within Echvi_2834 at 3395.335 kb on - strand, within Echvi_2834 at 3395.339 kb on - strand, within Echvi_2834 at 3395.396 kb on + strand, within Echvi_2834 at 3395.396 kb on + strand, within Echvi_2834 at 3395.397 kb on - strand, within Echvi_2834 at 3395.404 kb on - strand, within Echvi_2834 at 3395.426 kb on + strand, within Echvi_2834 at 3395.433 kb on + strand, within Echvi_2834 at 3395.433 kb on + strand, within Echvi_2834 at 3395.434 kb on - strand, within Echvi_2834 at 3395.434 kb on - strand, within Echvi_2834 at 3395.460 kb on + strand, within Echvi_2834 at 3395.497 kb on + strand, within Echvi_2834 at 3395.497 kb on + strand, within Echvi_2834 at 3395.498 kb on - strand, within Echvi_2834 at 3395.561 kb on - strand, within Echvi_2834 at 3395.562 kb on + strand, within Echvi_2834 at 3395.563 kb on - strand, within Echvi_2834 at 3395.661 kb on - strand, within Echvi_2834 at 3395.661 kb on - strand, within Echvi_2834 at 3395.710 kb on - strand at 3395.740 kb on + strand at 3395.741 kb on - strand at 3395.798 kb on + strand at 3395.799 kb on - strand at 3395.820 kb on - strand at 3396.091 kb on + strand, within Echvi_2835 at 3396.092 kb on - strand, within Echvi_2835 at 3396.092 kb on - strand, within Echvi_2835 at 3396.212 kb on - strand, within Echvi_2835 at 3396.230 kb on - strand, within Echvi_2835 at 3396.235 kb on - strand, within Echvi_2835 at 3396.235 kb on - strand, within Echvi_2835 at 3396.246 kb on - strand, within Echvi_2835 at 3396.255 kb on + strand, within Echvi_2835 at 3396.255 kb on + strand, within Echvi_2835 at 3396.437 kb on + strand, within Echvi_2835 at 3396.448 kb on + strand, within Echvi_2835 at 3396.449 kb on - strand, within Echvi_2835 at 3396.624 kb on + strand, within Echvi_2835 at 3396.647 kb on + strand, within Echvi_2835 at 3396.728 kb on - strand, within Echvi_2835 at 3396.778 kb on - strand, within Echvi_2835
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml remove 3,393,656 + -0.2 3,393,681 + -1.3 3,393,692 + +0.1 3,393,704 + -1.0 3,393,725 + -0.4 3,393,725 + -0.5 3,393,725 + -0.7 3,393,732 + +0.2 3,393,738 - -2.5 3,393,742 + -0.1 3,393,742 + +2.3 3,393,742 + -2.0 3,393,757 + -0.0 3,393,758 - -2.2 3,393,768 + +0.7 3,393,769 - -1.5 3,393,934 + Echvi_2833 0.24 -1.3 3,393,934 + Echvi_2833 0.24 -0.2 3,393,934 + Echvi_2833 0.24 -0.8 3,393,935 - Echvi_2833 0.24 -3.9 3,394,048 - Echvi_2833 0.41 -3.3 3,394,127 + Echvi_2833 0.53 -1.8 3,394,128 - Echvi_2833 0.53 -1.2 3,394,167 + Echvi_2833 0.59 -1.3 3,394,263 + Echvi_2833 0.73 -1.1 3,394,368 + Echvi_2833 0.88 -0.7 3,394,383 + -1.8 3,394,388 - -2.3 3,394,399 - -0.3 3,394,424 - -1.6 3,394,424 - -2.2 3,394,424 - -1.3 3,394,442 + -1.2 3,394,442 + +0.1 3,394,443 - -2.6 3,394,450 + +0.5 3,394,455 + -1.9 3,394,481 + -1.8 3,394,524 + -0.1 3,394,533 + -1.3 3,394,534 - -2.0 3,394,534 - -2.9 3,394,551 + +0.2 3,394,625 + Echvi_2834 0.13 -0.1 3,394,626 - Echvi_2834 0.13 -0.5 3,394,641 + Echvi_2834 0.14 -1.7 3,394,641 + Echvi_2834 0.14 -1.4 3,394,681 + Echvi_2834 0.17 +0.5 3,394,682 - Echvi_2834 0.17 -2.4 3,394,683 + Echvi_2834 0.17 -0.5 3,394,684 - Echvi_2834 0.17 -1.5 3,394,684 - Echvi_2834 0.17 -2.7 3,394,684 - Echvi_2834 0.17 +1.5 3,394,775 + Echvi_2834 0.24 -1.4 3,394,775 + Echvi_2834 0.24 -1.1 3,394,775 + Echvi_2834 0.24 -1.8 3,394,775 + Echvi_2834 0.24 -1.3 3,394,775 + Echvi_2834 0.24 -1.3 3,394,775 + Echvi_2834 0.24 -2.0 3,394,776 - Echvi_2834 0.24 -1.7 3,394,776 - Echvi_2834 0.24 -0.8 3,394,776 - Echvi_2834 0.24 -1.7 3,394,776 - Echvi_2834 0.24 -3.5 3,394,776 - Echvi_2834 0.24 -0.5 3,394,776 - Echvi_2834 0.24 -2.4 3,394,776 - Echvi_2834 0.24 -0.3 3,394,777 + Echvi_2834 0.24 -0.1 3,394,777 + Echvi_2834 0.24 -0.0 3,394,777 + Echvi_2834 0.24 -1.2 3,394,778 - Echvi_2834 0.24 -2.8 3,394,797 + Echvi_2834 0.25 -2.4 3,394,797 + Echvi_2834 0.25 -2.1 3,394,798 - Echvi_2834 0.25 -0.8 3,394,866 + Echvi_2834 0.30 -2.0 3,394,866 + Echvi_2834 0.30 -3.6 3,394,866 + Echvi_2834 0.30 -1.9 3,394,867 - Echvi_2834 0.31 -2.0 3,394,870 - Echvi_2834 0.31 -3.4 3,394,901 + Echvi_2834 0.33 -1.4 3,394,922 + Echvi_2834 0.35 -0.9 3,395,117 + Echvi_2834 0.49 -2.5 3,395,117 + Echvi_2834 0.49 -3.1 3,395,170 + Echvi_2834 0.53 -1.0 3,395,171 - Echvi_2834 0.53 -1.2 3,395,171 - Echvi_2834 0.53 -0.8 3,395,171 - Echvi_2834 0.53 +0.0 3,395,172 + Echvi_2834 0.53 -2.0 3,395,172 + Echvi_2834 0.53 -2.9 3,395,270 - Echvi_2834 0.60 +0.9 3,395,270 - Echvi_2834 0.60 -1.9 3,395,270 - Echvi_2834 0.60 -2.4 3,395,277 - Echvi_2834 0.61 -3.0 3,395,316 - Echvi_2834 0.64 -0.1 3,395,335 - Echvi_2834 0.65 +0.2 3,395,339 - Echvi_2834 0.66 -2.8 3,395,396 + Echvi_2834 0.70 -2.5 3,395,396 + Echvi_2834 0.70 -0.6 3,395,397 - Echvi_2834 0.70 -2.3 3,395,404 - Echvi_2834 0.70 +0.5 3,395,426 + Echvi_2834 0.72 -2.5 3,395,433 + Echvi_2834 0.73 +0.2 3,395,433 + Echvi_2834 0.73 -2.7 3,395,434 - Echvi_2834 0.73 -2.5 3,395,434 - Echvi_2834 0.73 -0.1 3,395,460 + Echvi_2834 0.75 -0.3 3,395,497 + Echvi_2834 0.77 -0.8 3,395,497 + Echvi_2834 0.77 -1.7 3,395,498 - Echvi_2834 0.77 -0.5 3,395,561 - Echvi_2834 0.82 -1.1 3,395,562 + Echvi_2834 0.82 +1.5 3,395,563 - Echvi_2834 0.82 -2.4 3,395,661 - Echvi_2834 0.89 -1.2 3,395,661 - Echvi_2834 0.89 -2.5 3,395,710 - +1.3 3,395,740 + -2.7 3,395,741 - -0.8 3,395,798 + -1.2 3,395,799 - -0.6 3,395,820 - -2.4 3,396,091 + Echvi_2835 0.22 -1.5 3,396,092 - Echvi_2835 0.22 -1.5 3,396,092 - Echvi_2835 0.22 -2.7 3,396,212 - Echvi_2835 0.31 -2.4 3,396,230 - Echvi_2835 0.32 -0.5 3,396,235 - Echvi_2835 0.33 -1.9 3,396,235 - Echvi_2835 0.33 -1.8 3,396,246 - Echvi_2835 0.34 -3.3 3,396,255 + Echvi_2835 0.34 -2.2 3,396,255 + Echvi_2835 0.34 -2.3 3,396,437 + Echvi_2835 0.48 -1.9 3,396,448 + Echvi_2835 0.49 -2.3 3,396,449 - Echvi_2835 0.49 -1.8 3,396,624 + Echvi_2835 0.63 -1.3 3,396,647 + Echvi_2835 0.65 -0.4 3,396,728 - Echvi_2835 0.71 +1.3 3,396,778 - Echvi_2835 0.75 -2.2
Or see this region's nucleotide sequence