Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2446

Experiment: m.b. Polymyxin B sulfate 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2445 and Echvi_2446 are separated by 61 nucleotidesEchvi_2446 and Echvi_2447 are separated by 85 nucleotides Echvi_2445: Echvi_2445 - PAS domain S-box, at 2,902,381 to 2,905,251 _2445 Echvi_2446: Echvi_2446 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes, at 2,905,313 to 2,906,596 _2446 Echvi_2447: Echvi_2447 - competence/damage-inducible protein CinA C-terminal domain, at 2,906,682 to 2,907,938 _2447 Position (kb) 2905 2906 2907Strain fitness (log2 ratio) -2 -1 0 1 2at 2904.393 kb on - strand, within Echvi_2445at 2904.393 kb on - strand, within Echvi_2445at 2904.472 kb on - strand, within Echvi_2445at 2904.574 kb on - strand, within Echvi_2445at 2904.708 kb on + strand, within Echvi_2445at 2904.787 kb on - strand, within Echvi_2445at 2904.852 kb on + strand, within Echvi_2445at 2904.853 kb on - strand, within Echvi_2445at 2904.907 kb on - strand, within Echvi_2445at 2904.921 kb on - strand, within Echvi_2445at 2905.016 kb on - strandat 2905.147 kb on - strandat 2905.149 kb on - strandat 2905.181 kb on - strandat 2905.195 kb on - strandat 2905.330 kb on + strandat 2906.740 kb on + strandat 2906.741 kb on - strandat 2906.963 kb on + strand, within Echvi_2447at 2906.985 kb on + strand, within Echvi_2447at 2907.175 kb on + strand, within Echvi_2447at 2907.179 kb on + strand, within Echvi_2447at 2907.181 kb on + strand, within Echvi_2447at 2907.222 kb on + strand, within Echvi_2447at 2907.223 kb on - strand, within Echvi_2447at 2907.243 kb on + strand, within Echvi_2447at 2907.264 kb on - strand, within Echvi_2447at 2907.298 kb on + strand, within Echvi_2447at 2907.299 kb on - strand, within Echvi_2447at 2907.495 kb on + strand, within Echvi_2447at 2907.567 kb on - strand, within Echvi_2447

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml
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2,904,393 - Echvi_2445 0.70 -0.3
2,904,393 - Echvi_2445 0.70 +1.0
2,904,472 - Echvi_2445 0.73 +1.1
2,904,574 - Echvi_2445 0.76 -0.2
2,904,708 + Echvi_2445 0.81 +2.0
2,904,787 - Echvi_2445 0.84 -1.0
2,904,852 + Echvi_2445 0.86 -0.8
2,904,853 - Echvi_2445 0.86 -0.4
2,904,907 - Echvi_2445 0.88 -1.0
2,904,921 - Echvi_2445 0.88 +0.2
2,905,016 - -0.1
2,905,147 - +1.3
2,905,149 - +0.7
2,905,181 - +1.5
2,905,195 - +0.8
2,905,330 + -2.1
2,906,740 + -1.0
2,906,741 - +0.5
2,906,963 + Echvi_2447 0.22 +0.3
2,906,985 + Echvi_2447 0.24 -1.0
2,907,175 + Echvi_2447 0.39 +0.4
2,907,179 + Echvi_2447 0.40 -0.6
2,907,181 + Echvi_2447 0.40 +0.7
2,907,222 + Echvi_2447 0.43 -0.6
2,907,223 - Echvi_2447 0.43 -0.2
2,907,243 + Echvi_2447 0.45 +0.5
2,907,264 - Echvi_2447 0.46 -0.8
2,907,298 + Echvi_2447 0.49 -2.5
2,907,299 - Echvi_2447 0.49 +0.4
2,907,495 + Echvi_2447 0.65 +1.8
2,907,567 - Echvi_2447 0.70 +1.8

Or see this region's nucleotide sequence