Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2261

Experiment: m.b. Polymyxin B sulfate 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2259 and Echvi_2260 are separated by 3 nucleotidesEchvi_2260 and Echvi_2261 overlap by 4 nucleotidesEchvi_2261 and Echvi_2262 are separated by 39 nucleotides Echvi_2259: Echvi_2259 - ABC-type multidrug transport system, ATPase component, at 2,676,848 to 2,677,483 _2259 Echvi_2260: Echvi_2260 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, at 2,677,487 to 2,678,266 _2260 Echvi_2261: Echvi_2261 - UDP-3-0-acyl N-acetylglucosamine deacetylase/beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ, at 2,678,263 to 2,679,657 _2261 Echvi_2262: Echvi_2262 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, at 2,679,697 to 2,680,719 _2262 Position (kb) 2678 2679 2680Strain fitness (log2 ratio) -2 -1 0 1at 2677.498 kb on - strandat 2678.282 kb on - strandat 2678.284 kb on - strandat 2679.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml
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2,677,498 - +0.0
2,678,282 - -2.4
2,678,284 - -2.5
2,679,681 - -0.5

Or see this region's nucleotide sequence