Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0776

Experiment: m.b. Polymyxin B sulfate 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0774 and Echvi_0775 are separated by 36 nucleotidesEchvi_0775 and Echvi_0776 are separated by 18 nucleotidesEchvi_0776 and Echvi_0777 are separated by 154 nucleotides Echvi_0774: Echvi_0774 - hypothetical protein, at 873,296 to 873,400 _0774 Echvi_0775: Echvi_0775 - NAD binding domain of 6-phosphogluconate dehydrogenase., at 873,437 to 874,339 _0775 Echvi_0776: Echvi_0776 - Sterol desaturase, at 874,358 to 874,987 _0776 Echvi_0777: Echvi_0777 - N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA, at 875,142 to 876,281 _0777 Position (kb) 874 875Strain fitness (log2 ratio) -2 -1 0 1 2 3at 873.457 kb on + strandat 873.457 kb on + strandat 873.457 kb on + strandat 873.459 kb on + strandat 873.463 kb on - strandat 873.558 kb on + strand, within Echvi_0775at 873.605 kb on + strand, within Echvi_0775at 873.605 kb on + strand, within Echvi_0775at 873.605 kb on + strand, within Echvi_0775at 873.605 kb on + strand, within Echvi_0775at 873.606 kb on - strand, within Echvi_0775at 873.626 kb on + strand, within Echvi_0775at 873.627 kb on - strand, within Echvi_0775at 873.701 kb on + strand, within Echvi_0775at 873.701 kb on + strand, within Echvi_0775at 873.702 kb on - strand, within Echvi_0775at 873.715 kb on - strand, within Echvi_0775at 873.759 kb on + strand, within Echvi_0775at 873.759 kb on + strand, within Echvi_0775at 873.839 kb on + strand, within Echvi_0775at 873.839 kb on + strand, within Echvi_0775at 873.840 kb on - strand, within Echvi_0775at 873.878 kb on - strand, within Echvi_0775at 873.919 kb on + strand, within Echvi_0775at 873.937 kb on + strand, within Echvi_0775at 873.980 kb on - strand, within Echvi_0775at 873.998 kb on + strand, within Echvi_0775at 873.999 kb on - strand, within Echvi_0775at 874.187 kb on + strand, within Echvi_0775at 874.187 kb on + strand, within Echvi_0775at 874.250 kb on + strandat 874.251 kb on - strandat 874.267 kb on + strandat 874.267 kb on + strandat 874.284 kb on + strandat 874.284 kb on + strandat 874.284 kb on + strandat 874.284 kb on + strandat 874.315 kb on + strandat 874.315 kb on + strandat 874.360 kb on - strandat 874.439 kb on - strand, within Echvi_0776at 874.440 kb on + strand, within Echvi_0776at 874.505 kb on + strand, within Echvi_0776at 874.505 kb on + strand, within Echvi_0776at 874.505 kb on + strand, within Echvi_0776at 874.506 kb on - strand, within Echvi_0776at 874.506 kb on - strand, within Echvi_0776at 874.506 kb on - strand, within Echvi_0776at 874.511 kb on - strand, within Echvi_0776at 874.512 kb on + strand, within Echvi_0776at 874.512 kb on + strand, within Echvi_0776at 874.513 kb on - strand, within Echvi_0776at 874.513 kb on - strand, within Echvi_0776at 874.527 kb on + strand, within Echvi_0776at 874.527 kb on + strand, within Echvi_0776at 874.537 kb on - strand, within Echvi_0776at 874.592 kb on - strand, within Echvi_0776at 874.631 kb on - strand, within Echvi_0776at 874.688 kb on + strand, within Echvi_0776at 874.695 kb on + strand, within Echvi_0776at 874.700 kb on + strand, within Echvi_0776at 874.714 kb on + strand, within Echvi_0776at 874.732 kb on + strand, within Echvi_0776at 874.732 kb on + strand, within Echvi_0776at 874.733 kb on - strand, within Echvi_0776at 874.733 kb on - strand, within Echvi_0776at 874.747 kb on + strand, within Echvi_0776at 874.748 kb on - strand, within Echvi_0776at 874.790 kb on + strand, within Echvi_0776at 874.790 kb on + strand, within Echvi_0776at 874.791 kb on - strand, within Echvi_0776at 874.792 kb on + strand, within Echvi_0776at 874.793 kb on - strand, within Echvi_0776at 874.802 kb on + strand, within Echvi_0776at 874.882 kb on + strand, within Echvi_0776at 874.882 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.891 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.894 kb on + strand, within Echvi_0776at 874.895 kb on - strand, within Echvi_0776at 874.895 kb on - strand, within Echvi_0776at 874.895 kb on - strand, within Echvi_0776at 874.996 kb on - strandat 875.034 kb on + strandat 875.035 kb on - strandat 875.093 kb on + strandat 875.110 kb on + strandat 875.127 kb on - strandat 875.127 kb on - strandat 875.156 kb on + strandat 875.202 kb on + strandat 875.415 kb on + strand, within Echvi_0777

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml
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873,457 + +1.1
873,457 + -0.3
873,457 + +0.4
873,459 + -0.2
873,463 - -0.6
873,558 + Echvi_0775 0.13 +1.3
873,605 + Echvi_0775 0.19 -1.5
873,605 + Echvi_0775 0.19 +0.4
873,605 + Echvi_0775 0.19 +0.2
873,605 + Echvi_0775 0.19 +0.0
873,606 - Echvi_0775 0.19 +1.7
873,626 + Echvi_0775 0.21 -0.8
873,627 - Echvi_0775 0.21 -1.6
873,701 + Echvi_0775 0.29 +0.7
873,701 + Echvi_0775 0.29 -0.3
873,702 - Echvi_0775 0.29 -0.4
873,715 - Echvi_0775 0.31 -2.2
873,759 + Echvi_0775 0.36 +0.2
873,759 + Echvi_0775 0.36 -0.3
873,839 + Echvi_0775 0.45 +1.5
873,839 + Echvi_0775 0.45 -1.1
873,840 - Echvi_0775 0.45 -0.2
873,878 - Echvi_0775 0.49 +2.1
873,919 + Echvi_0775 0.53 +1.2
873,937 + Echvi_0775 0.55 -0.1
873,980 - Echvi_0775 0.60 +0.5
873,998 + Echvi_0775 0.62 +1.5
873,999 - Echvi_0775 0.62 +0.7
874,187 + Echvi_0775 0.83 -1.3
874,187 + Echvi_0775 0.83 +0.1
874,250 + -0.3
874,251 - +0.3
874,267 + +1.7
874,267 + +0.2
874,284 + +1.4
874,284 + +0.3
874,284 + +0.8
874,284 + +0.3
874,315 + +1.0
874,315 + +0.1
874,360 - -0.1
874,439 - Echvi_0776 0.13 +2.0
874,440 + Echvi_0776 0.13 +2.2
874,505 + Echvi_0776 0.23 +2.5
874,505 + Echvi_0776 0.23 +1.9
874,505 + Echvi_0776 0.23 +0.8
874,506 - Echvi_0776 0.23 +2.3
874,506 - Echvi_0776 0.23 +2.7
874,506 - Echvi_0776 0.23 +3.7
874,511 - Echvi_0776 0.24 +2.0
874,512 + Echvi_0776 0.24 +2.0
874,512 + Echvi_0776 0.24 +2.6
874,513 - Echvi_0776 0.25 +1.4
874,513 - Echvi_0776 0.25 +2.1
874,527 + Echvi_0776 0.27 +2.6
874,527 + Echvi_0776 0.27 +3.0
874,537 - Echvi_0776 0.28 +1.0
874,592 - Echvi_0776 0.37 +2.5
874,631 - Echvi_0776 0.43 +1.9
874,688 + Echvi_0776 0.52 +3.0
874,695 + Echvi_0776 0.53 +2.1
874,700 + Echvi_0776 0.54 +2.6
874,714 + Echvi_0776 0.57 +2.0
874,732 + Echvi_0776 0.59 +2.5
874,732 + Echvi_0776 0.59 +2.3
874,733 - Echvi_0776 0.60 +2.6
874,733 - Echvi_0776 0.60 +1.9
874,747 + Echvi_0776 0.62 +1.7
874,748 - Echvi_0776 0.62 +1.9
874,790 + Echvi_0776 0.69 +3.3
874,790 + Echvi_0776 0.69 +3.0
874,791 - Echvi_0776 0.69 +2.7
874,792 + Echvi_0776 0.69 +2.0
874,793 - Echvi_0776 0.69 +2.7
874,802 + Echvi_0776 0.70 +2.7
874,882 + Echvi_0776 0.83 +2.3
874,882 + Echvi_0776 0.83 +2.4
874,891 + Echvi_0776 0.85 +2.5
874,891 + Echvi_0776 0.85 +2.6
874,891 + Echvi_0776 0.85 +1.6
874,891 + Echvi_0776 0.85 +2.6
874,891 + Echvi_0776 0.85 +2.7
874,894 + Echvi_0776 0.85 +2.4
874,894 + Echvi_0776 0.85 +2.5
874,894 + Echvi_0776 0.85 +2.4
874,894 + Echvi_0776 0.85 +2.9
874,894 + Echvi_0776 0.85 +1.9
874,894 + Echvi_0776 0.85 +3.3
874,894 + Echvi_0776 0.85 +2.7
874,894 + Echvi_0776 0.85 +1.7
874,895 - Echvi_0776 0.85 +2.9
874,895 - Echvi_0776 0.85 +2.4
874,895 - Echvi_0776 0.85 +2.2
874,996 - +2.2
875,034 + +2.0
875,035 - -0.1
875,093 + +2.8
875,110 + +1.8
875,127 - -2.6
875,127 - +1.4
875,156 + -1.8
875,202 + -0.6
875,415 + Echvi_0777 0.24 -0.8

Or see this region's nucleotide sequence