Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0640

Experiment: m.b. Polymyxin B sulfate 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0638 and Echvi_0639 are separated by 335 nucleotidesEchvi_0639 and Echvi_0640 are separated by 106 nucleotidesEchvi_0640 and Echvi_0641 are separated by 80 nucleotides Echvi_0638: Echvi_0638 - hypothetical protein, at 722,395 to 723,111 _0638 Echvi_0639: Echvi_0639 - hypothetical protein, at 723,447 to 723,692 _0639 Echvi_0640: Echvi_0640 - hypothetical protein, at 723,799 to 724,092 _0640 Echvi_0641: Echvi_0641 - Transposase and inactivated derivatives, at 724,173 to 725,405 _0641 Position (kb) 723 724 725Strain fitness (log2 ratio) -2 -1 0 1 2at 722.829 kb on - strand, within Echvi_0638at 722.912 kb on - strand, within Echvi_0638at 722.914 kb on + strand, within Echvi_0638at 722.914 kb on + strand, within Echvi_0638at 722.915 kb on - strand, within Echvi_0638at 722.915 kb on - strand, within Echvi_0638at 722.986 kb on + strand, within Echvi_0638at 722.986 kb on + strand, within Echvi_0638at 722.987 kb on - strand, within Echvi_0638at 723.005 kb on + strand, within Echvi_0638at 723.093 kb on - strandat 723.109 kb on + strandat 723.127 kb on - strandat 723.149 kb on - strandat 723.156 kb on + strandat 723.156 kb on + strandat 723.157 kb on - strandat 723.265 kb on + strandat 723.265 kb on + strandat 723.266 kb on - strandat 723.266 kb on - strandat 723.298 kb on + strandat 723.298 kb on + strandat 723.298 kb on + strandat 723.298 kb on + strandat 723.299 kb on - strandat 723.382 kb on + strandat 723.382 kb on + strandat 723.382 kb on + strandat 723.407 kb on - strandat 723.453 kb on + strandat 723.453 kb on + strandat 723.498 kb on - strand, within Echvi_0639at 723.498 kb on - strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.506 kb on + strand, within Echvi_0639at 723.506 kb on + strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.568 kb on + strand, within Echvi_0639at 723.740 kb on + strandat 723.824 kb on + strandat 723.824 kb on + strandat 723.825 kb on - strandat 723.825 kb on - strandat 723.899 kb on - strand, within Echvi_0640at 723.926 kb on - strand, within Echvi_0640at 723.983 kb on + strand, within Echvi_0640at 723.984 kb on - strand, within Echvi_0640at 724.003 kb on + strand, within Echvi_0640at 724.010 kb on - strand, within Echvi_0640at 724.010 kb on - strand, within Echvi_0640at 724.016 kb on - strand, within Echvi_0640at 724.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml
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722,829 - Echvi_0638 0.61 +0.8
722,912 - Echvi_0638 0.72 -1.3
722,914 + Echvi_0638 0.72 +0.4
722,914 + Echvi_0638 0.72 -0.1
722,915 - Echvi_0638 0.73 +0.1
722,915 - Echvi_0638 0.73 +0.8
722,986 + Echvi_0638 0.82 +0.4
722,986 + Echvi_0638 0.82 -0.7
722,987 - Echvi_0638 0.83 -0.5
723,005 + Echvi_0638 0.85 -0.7
723,093 - -2.1
723,109 + -0.3
723,127 - +0.9
723,149 - -0.1
723,156 + -0.1
723,156 + -0.3
723,157 - +0.6
723,265 + +2.3
723,265 + +1.0
723,266 - -0.6
723,266 - +0.9
723,298 + +1.3
723,298 + -1.0
723,298 + -0.6
723,298 + +0.5
723,299 - +0.2
723,382 + -0.0
723,382 + +0.7
723,382 + -0.1
723,407 - -1.3
723,453 + +1.0
723,453 + +1.1
723,498 - Echvi_0639 0.21 -1.6
723,498 - Echvi_0639 0.21 +0.6
723,503 + Echvi_0639 0.23 -1.2
723,503 + Echvi_0639 0.23 -0.9
723,503 + Echvi_0639 0.23 +0.2
723,503 + Echvi_0639 0.23 +0.1
723,503 + Echvi_0639 0.23 +0.5
723,503 + Echvi_0639 0.23 -0.1
723,504 - Echvi_0639 0.23 +0.5
723,504 - Echvi_0639 0.23 -0.1
723,504 - Echvi_0639 0.23 +0.3
723,504 - Echvi_0639 0.23 +1.7
723,506 + Echvi_0639 0.24 -0.3
723,506 + Echvi_0639 0.24 +0.5
723,507 - Echvi_0639 0.24 +0.2
723,507 - Echvi_0639 0.24 +0.6
723,507 - Echvi_0639 0.24 -0.1
723,507 - Echvi_0639 0.24 -1.7
723,507 - Echvi_0639 0.24 -1.7
723,507 - Echvi_0639 0.24 -0.3
723,507 - Echvi_0639 0.24 +0.4
723,568 + Echvi_0639 0.49 +1.2
723,740 + +0.1
723,824 + -0.8
723,824 + +0.4
723,825 - +1.0
723,825 - -1.0
723,899 - Echvi_0640 0.34 -0.4
723,926 - Echvi_0640 0.43 +1.0
723,983 + Echvi_0640 0.63 +0.1
723,984 - Echvi_0640 0.63 -0.1
724,003 + Echvi_0640 0.69 +0.8
724,010 - Echvi_0640 0.72 +0.2
724,010 - Echvi_0640 0.72 +0.8
724,016 - Echvi_0640 0.74 +0.9
724,102 - +0.1

Or see this region's nucleotide sequence