Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0633

Experiment: m.b. Polymyxin B sulfate 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0632 and Echvi_0633 overlap by 8 nucleotidesEchvi_0633 and Echvi_0634 overlap by 50 nucleotides Echvi_0632: Echvi_0632 - Parvulin-like peptidyl-prolyl isomerase, at 715,078 to 716,484 _0632 Echvi_0633: Echvi_0633 - hypothetical protein, at 716,477 to 717,400 _0633 Echvi_0634: Echvi_0634 - Parvulin-like peptidyl-prolyl isomerase, at 717,351 to 719,366 _0634 Position (kb) 716 717 718Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 716.552 kb on + strandat 716.552 kb on + strandat 716.563 kb on + strandat 716.578 kb on + strand, within Echvi_0633at 716.652 kb on + strand, within Echvi_0633at 716.653 kb on - strand, within Echvi_0633at 716.656 kb on + strand, within Echvi_0633at 716.656 kb on + strand, within Echvi_0633at 716.656 kb on + strand, within Echvi_0633at 716.657 kb on - strand, within Echvi_0633at 716.657 kb on - strand, within Echvi_0633at 716.657 kb on - strand, within Echvi_0633at 716.657 kb on - strand, within Echvi_0633at 716.657 kb on - strand, within Echvi_0633at 716.658 kb on + strand, within Echvi_0633at 716.658 kb on + strand, within Echvi_0633at 716.659 kb on - strand, within Echvi_0633at 716.714 kb on - strand, within Echvi_0633at 716.787 kb on + strand, within Echvi_0633at 716.873 kb on - strand, within Echvi_0633at 716.941 kb on + strand, within Echvi_0633at 716.958 kb on + strand, within Echvi_0633at 716.959 kb on - strand, within Echvi_0633at 717.010 kb on + strand, within Echvi_0633at 717.013 kb on - strand, within Echvi_0633at 717.013 kb on - strand, within Echvi_0633at 717.024 kb on + strand, within Echvi_0633at 717.025 kb on - strand, within Echvi_0633at 717.045 kb on + strand, within Echvi_0633at 717.046 kb on - strand, within Echvi_0633at 717.049 kb on + strand, within Echvi_0633at 717.049 kb on + strand, within Echvi_0633at 717.049 kb on + strand, within Echvi_0633at 717.050 kb on - strand, within Echvi_0633at 717.050 kb on - strand, within Echvi_0633at 717.050 kb on - strand, within Echvi_0633at 717.051 kb on + strand, within Echvi_0633at 717.051 kb on + strand, within Echvi_0633at 717.059 kb on + strand, within Echvi_0633at 717.118 kb on + strand, within Echvi_0633at 717.118 kb on + strand, within Echvi_0633at 717.118 kb on + strand, within Echvi_0633at 717.119 kb on - strand, within Echvi_0633at 717.169 kb on + strand, within Echvi_0633at 717.225 kb on + strand, within Echvi_0633at 717.225 kb on + strand, within Echvi_0633at 717.226 kb on - strand, within Echvi_0633at 717.226 kb on - strand, within Echvi_0633at 717.307 kb on + strand, within Echvi_0633at 717.307 kb on + strand, within Echvi_0633at 717.308 kb on - strandat 717.338 kb on + strandat 717.339 kb on - strandat 717.339 kb on - strandat 717.339 kb on - strandat 717.352 kb on + strandat 717.353 kb on - strandat 717.372 kb on - strandat 717.430 kb on - strandat 717.430 kb on - strandat 717.539 kb on + strandat 717.539 kb on + strandat 717.540 kb on - strandat 717.540 kb on - strandat 717.540 kb on - strandat 717.540 kb on - strandat 717.541 kb on + strandat 717.542 kb on - strandat 717.542 kb on - strandat 717.542 kb on - strandat 717.542 kb on - strandat 717.560 kb on + strand, within Echvi_0634at 717.609 kb on - strand, within Echvi_0634at 717.625 kb on - strand, within Echvi_0634at 717.649 kb on - strand, within Echvi_0634at 717.730 kb on - strand, within Echvi_0634at 717.756 kb on + strand, within Echvi_0634at 717.796 kb on + strand, within Echvi_0634at 717.797 kb on - strand, within Echvi_0634at 717.797 kb on - strand, within Echvi_0634at 718.029 kb on + strand, within Echvi_0634at 718.030 kb on - strand, within Echvi_0634at 718.098 kb on - strand, within Echvi_0634at 718.107 kb on - strand, within Echvi_0634at 718.107 kb on - strand, within Echvi_0634at 718.107 kb on - strand, within Echvi_0634at 718.107 kb on - strand, within Echvi_0634at 718.107 kb on - strand, within Echvi_0634at 718.107 kb on - strand, within Echvi_0634at 718.130 kb on + strand, within Echvi_0634at 718.130 kb on + strand, within Echvi_0634at 718.131 kb on - strand, within Echvi_0634at 718.132 kb on + strand, within Echvi_0634at 718.132 kb on + strand, within Echvi_0634at 718.132 kb on + strand, within Echvi_0634at 718.132 kb on + strand, within Echvi_0634at 718.133 kb on - strand, within Echvi_0634at 718.137 kb on - strand, within Echvi_0634at 718.137 kb on - strand, within Echvi_0634at 718.151 kb on + strand, within Echvi_0634at 718.152 kb on - strand, within Echvi_0634at 718.152 kb on - strand, within Echvi_0634at 718.152 kb on - strand, within Echvi_0634at 718.205 kb on + strand, within Echvi_0634at 718.259 kb on + strand, within Echvi_0634at 718.259 kb on + strand, within Echvi_0634at 718.319 kb on - strand, within Echvi_0634at 718.366 kb on + strand, within Echvi_0634

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml
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716,552 + -1.9
716,552 + +0.7
716,563 + -1.8
716,578 + Echvi_0633 0.11 -2.7
716,652 + Echvi_0633 0.19 -2.5
716,653 - Echvi_0633 0.19 -0.2
716,656 + Echvi_0633 0.19 -1.4
716,656 + Echvi_0633 0.19 -3.1
716,656 + Echvi_0633 0.19 -0.3
716,657 - Echvi_0633 0.19 +0.3
716,657 - Echvi_0633 0.19 -0.8
716,657 - Echvi_0633 0.19 +1.1
716,657 - Echvi_0633 0.19 -1.4
716,657 - Echvi_0633 0.19 +0.2
716,658 + Echvi_0633 0.20 -3.1
716,658 + Echvi_0633 0.20 -1.8
716,659 - Echvi_0633 0.20 -0.2
716,714 - Echvi_0633 0.26 +1.3
716,787 + Echvi_0633 0.34 -1.4
716,873 - Echvi_0633 0.43 +1.2
716,941 + Echvi_0633 0.50 -4.0
716,958 + Echvi_0633 0.52 -1.4
716,959 - Echvi_0633 0.52 -2.3
717,010 + Echvi_0633 0.58 -0.6
717,013 - Echvi_0633 0.58 -0.4
717,013 - Echvi_0633 0.58 -0.8
717,024 + Echvi_0633 0.59 -2.5
717,025 - Echvi_0633 0.59 -0.3
717,045 + Echvi_0633 0.61 -2.4
717,046 - Echvi_0633 0.62 -0.5
717,049 + Echvi_0633 0.62 -2.1
717,049 + Echvi_0633 0.62 -3.0
717,049 + Echvi_0633 0.62 -1.2
717,050 - Echvi_0633 0.62 +0.6
717,050 - Echvi_0633 0.62 -0.8
717,050 - Echvi_0633 0.62 -0.0
717,051 + Echvi_0633 0.62 -4.0
717,051 + Echvi_0633 0.62 -3.2
717,059 + Echvi_0633 0.63 -1.1
717,118 + Echvi_0633 0.69 -1.5
717,118 + Echvi_0633 0.69 -1.1
717,118 + Echvi_0633 0.69 -0.6
717,119 - Echvi_0633 0.69 +0.1
717,169 + Echvi_0633 0.75 -0.4
717,225 + Echvi_0633 0.81 -2.0
717,225 + Echvi_0633 0.81 -1.8
717,226 - Echvi_0633 0.81 -0.7
717,226 - Echvi_0633 0.81 -0.0
717,307 + Echvi_0633 0.90 -1.8
717,307 + Echvi_0633 0.90 -2.8
717,308 - +0.6
717,338 + -1.5
717,339 - +0.2
717,339 - +1.1
717,339 - -0.3
717,352 + -1.8
717,353 - -0.3
717,372 - +0.7
717,430 - -0.9
717,430 - +0.6
717,539 + -5.4
717,539 + -3.3
717,540 - -0.1
717,540 - -0.1
717,540 - -0.9
717,540 - -2.0
717,541 + +0.5
717,542 - -1.6
717,542 - -0.8
717,542 - -0.5
717,542 - +0.1
717,560 + Echvi_0634 0.10 -2.6
717,609 - Echvi_0634 0.13 +0.5
717,625 - Echvi_0634 0.14 -0.2
717,649 - Echvi_0634 0.15 -1.2
717,730 - Echvi_0634 0.19 +0.7
717,756 + Echvi_0634 0.20 -1.5
717,796 + Echvi_0634 0.22 -1.3
717,797 - Echvi_0634 0.22 +0.6
717,797 - Echvi_0634 0.22 -2.3
718,029 + Echvi_0634 0.34 -2.5
718,030 - Echvi_0634 0.34 +0.7
718,098 - Echvi_0634 0.37 +1.2
718,107 - Echvi_0634 0.38 -0.6
718,107 - Echvi_0634 0.38 -1.0
718,107 - Echvi_0634 0.38 -2.0
718,107 - Echvi_0634 0.38 -1.5
718,107 - Echvi_0634 0.38 +1.4
718,107 - Echvi_0634 0.38 -1.0
718,130 + Echvi_0634 0.39 -2.6
718,130 + Echvi_0634 0.39 -3.1
718,131 - Echvi_0634 0.39 -0.8
718,132 + Echvi_0634 0.39 -2.9
718,132 + Echvi_0634 0.39 -0.7
718,132 + Echvi_0634 0.39 -1.7
718,132 + Echvi_0634 0.39 -2.7
718,133 - Echvi_0634 0.39 -1.5
718,137 - Echvi_0634 0.39 -0.0
718,137 - Echvi_0634 0.39 -2.3
718,151 + Echvi_0634 0.40 -3.0
718,152 - Echvi_0634 0.40 +0.0
718,152 - Echvi_0634 0.40 -0.2
718,152 - Echvi_0634 0.40 +0.2
718,205 + Echvi_0634 0.42 -0.9
718,259 + Echvi_0634 0.45 -1.9
718,259 + Echvi_0634 0.45 -1.6
718,319 - Echvi_0634 0.48 -3.5
718,366 + Echvi_0634 0.50 -1.7

Or see this region's nucleotide sequence