Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0582

Experiment: m.b. Polymyxin B sulfate 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0580 and Echvi_0581 overlap by 47 nucleotidesEchvi_0581 and Echvi_0582 are separated by 129 nucleotidesEchvi_0582 and Echvi_0583 are separated by 574 nucleotides Echvi_0580: Echvi_0580 - hypothetical protein, at 658,029 to 659,177 _0580 Echvi_0581: Echvi_0581 - hypothetical protein, at 659,131 to 659,361 _0581 Echvi_0582: Echvi_0582 - hypothetical protein, at 659,491 to 659,802 _0582 Echvi_0583: Echvi_0583 - Pseudouridylate synthases, 23S RNA-specific, at 660,377 to 661,111 _0583 Position (kb) 659 660Strain fitness (log2 ratio) -2 -1 0 1at 658.706 kb on + strand, within Echvi_0580at 658.707 kb on - strand, within Echvi_0580at 658.707 kb on - strand, within Echvi_0580at 658.783 kb on - strand, within Echvi_0580at 658.794 kb on - strand, within Echvi_0580at 658.803 kb on + strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.804 kb on - strand, within Echvi_0580at 658.805 kb on + strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.806 kb on - strand, within Echvi_0580at 658.878 kb on + strand, within Echvi_0580at 658.878 kb on + strand, within Echvi_0580at 658.879 kb on - strand, within Echvi_0580at 658.879 kb on - strand, within Echvi_0580at 658.897 kb on + strand, within Echvi_0580at 658.898 kb on - strand, within Echvi_0580at 658.898 kb on - strand, within Echvi_0580at 658.917 kb on - strand, within Echvi_0580at 658.934 kb on - strand, within Echvi_0580at 658.945 kb on - strand, within Echvi_0580at 658.949 kb on + strand, within Echvi_0580at 658.955 kb on - strand, within Echvi_0580at 658.955 kb on - strand, within Echvi_0580at 659.048 kb on - strand, within Echvi_0580at 659.048 kb on - strand, within Echvi_0580at 659.064 kb on - strandat 659.074 kb on + strandat 659.251 kb on + strand, within Echvi_0581at 659.450 kb on - strandat 659.450 kb on - strandat 659.483 kb on - strandat 659.496 kb on + strandat 659.508 kb on + strandat 659.603 kb on - strand, within Echvi_0582at 659.626 kb on - strand, within Echvi_0582at 659.639 kb on + strand, within Echvi_0582at 659.640 kb on - strand, within Echvi_0582at 659.664 kb on - strand, within Echvi_0582at 659.664 kb on - strand, within Echvi_0582at 659.664 kb on - strand, within Echvi_0582at 659.727 kb on + strand, within Echvi_0582at 659.728 kb on - strand, within Echvi_0582at 659.812 kb on + strandat 659.840 kb on + strandat 659.864 kb on + strandat 659.884 kb on + strandat 659.951 kb on + strandat 659.952 kb on - strandat 660.060 kb on + strandat 660.093 kb on + strandat 660.093 kb on + strandat 660.096 kb on + strandat 660.097 kb on - strandat 660.221 kb on - strandat 660.334 kb on - strandat 660.334 kb on - strandat 660.385 kb on + strandat 660.391 kb on + strandat 660.419 kb on + strandat 660.420 kb on - strandat 660.438 kb on + strandat 660.480 kb on + strand, within Echvi_0583at 660.481 kb on - strand, within Echvi_0583at 660.570 kb on + strand, within Echvi_0583at 660.650 kb on + strand, within Echvi_0583at 660.693 kb on + strand, within Echvi_0583at 660.713 kb on - strand, within Echvi_0583at 660.735 kb on + strand, within Echvi_0583at 660.736 kb on - strand, within Echvi_0583at 660.736 kb on - strand, within Echvi_0583at 660.775 kb on - strand, within Echvi_0583

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml
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658,706 + Echvi_0580 0.59 +0.4
658,707 - Echvi_0580 0.59 +0.4
658,707 - Echvi_0580 0.59 -0.1
658,783 - Echvi_0580 0.66 -0.5
658,794 - Echvi_0580 0.67 +1.0
658,803 + Echvi_0580 0.67 +1.2
658,804 - Echvi_0580 0.67 +1.2
658,804 - Echvi_0580 0.67 -0.8
658,804 - Echvi_0580 0.67 +0.2
658,804 - Echvi_0580 0.67 -2.1
658,804 - Echvi_0580 0.67 +0.7
658,805 + Echvi_0580 0.68 +0.3
658,806 - Echvi_0580 0.68 -1.1
658,806 - Echvi_0580 0.68 -0.3
658,806 - Echvi_0580 0.68 +0.6
658,806 - Echvi_0580 0.68 -1.1
658,806 - Echvi_0580 0.68 +0.8
658,806 - Echvi_0580 0.68 -0.1
658,806 - Echvi_0580 0.68 -0.4
658,878 + Echvi_0580 0.74 +0.4
658,878 + Echvi_0580 0.74 +0.4
658,879 - Echvi_0580 0.74 +0.5
658,879 - Echvi_0580 0.74 -0.1
658,897 + Echvi_0580 0.76 +0.1
658,898 - Echvi_0580 0.76 +0.7
658,898 - Echvi_0580 0.76 -0.5
658,917 - Echvi_0580 0.77 +1.2
658,934 - Echvi_0580 0.79 +0.2
658,945 - Echvi_0580 0.80 -0.2
658,949 + Echvi_0580 0.80 -1.4
658,955 - Echvi_0580 0.81 -0.4
658,955 - Echvi_0580 0.81 +0.4
659,048 - Echvi_0580 0.89 +0.3
659,048 - Echvi_0580 0.89 +0.2
659,064 - -0.5
659,074 + +0.4
659,251 + Echvi_0581 0.52 +0.7
659,450 - +0.4
659,450 - +0.5
659,483 - +0.8
659,496 + +0.1
659,508 + +0.4
659,603 - Echvi_0582 0.36 +0.7
659,626 - Echvi_0582 0.43 -0.9
659,639 + Echvi_0582 0.47 +1.4
659,640 - Echvi_0582 0.48 +0.2
659,664 - Echvi_0582 0.55 +0.5
659,664 - Echvi_0582 0.55 +0.0
659,664 - Echvi_0582 0.55 +1.3
659,727 + Echvi_0582 0.76 +0.7
659,728 - Echvi_0582 0.76 +0.1
659,812 + +1.2
659,840 + +1.4
659,864 + +0.5
659,884 + -0.5
659,951 + +0.0
659,952 - -0.6
660,060 + +0.5
660,093 + -2.4
660,093 + -2.4
660,096 + -0.3
660,097 - +0.3
660,221 - -0.9
660,334 - +1.4
660,334 - -0.0
660,385 + -1.2
660,391 + +0.4
660,419 + +0.5
660,420 - +1.1
660,438 + -0.0
660,480 + Echvi_0583 0.14 -0.7
660,481 - Echvi_0583 0.14 -1.0
660,570 + Echvi_0583 0.26 +1.7
660,650 + Echvi_0583 0.37 -1.0
660,693 + Echvi_0583 0.43 -0.4
660,713 - Echvi_0583 0.46 +0.4
660,735 + Echvi_0583 0.49 -0.6
660,736 - Echvi_0583 0.49 +0.4
660,736 - Echvi_0583 0.49 -0.1
660,775 - Echvi_0583 0.54 -0.5

Or see this region's nucleotide sequence