Experiment: m.b. Polymyxin B sulfate 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0538 and Echvi_0539 overlap by 53 nucleotides Echvi_0539 and Echvi_0540 are separated by 219 nucleotides Echvi_0540 and Echvi_0541 overlap by 8 nucleotides
Echvi_0538: Echvi_0538 - hypothetical protein, at 600,230 to 601,024
_0538
Echvi_0539: Echvi_0539 - Protein of unknown function (DUF3037)., at 600,972 to 601,379
_0539
Echvi_0540: Echvi_0540 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 601,599 to 603,032
_0540
Echvi_0541: Echvi_0541 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 603,025 to 606,189
_0541
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 600.664 kb on + strand, within Echvi_0538 at 600.942 kb on - strand, within Echvi_0538 at 600.942 kb on - strand, within Echvi_0538 at 600.960 kb on + strand at 600.960 kb on + strand at 601.019 kb on - strand at 601.020 kb on + strand at 601.020 kb on + strand at 601.021 kb on - strand at 601.027 kb on - strand, within Echvi_0539 at 601.079 kb on - strand, within Echvi_0539 at 601.079 kb on - strand, within Echvi_0539 at 601.114 kb on + strand, within Echvi_0539 at 601.151 kb on - strand, within Echvi_0539 at 601.156 kb on + strand, within Echvi_0539 at 601.157 kb on - strand, within Echvi_0539 at 601.175 kb on - strand, within Echvi_0539 at 601.175 kb on - strand, within Echvi_0539 at 601.241 kb on + strand, within Echvi_0539 at 601.241 kb on + strand, within Echvi_0539 at 601.245 kb on - strand, within Echvi_0539 at 601.332 kb on - strand, within Echvi_0539 at 601.372 kb on + strand at 601.372 kb on + strand at 601.373 kb on - strand at 601.377 kb on + strand at 601.377 kb on + strand at 601.377 kb on + strand at 601.377 kb on + strand at 601.378 kb on - strand at 601.378 kb on - strand at 601.378 kb on - strand at 601.378 kb on - strand at 601.459 kb on + strand at 601.460 kb on - strand at 601.460 kb on - strand at 601.460 kb on - strand at 601.469 kb on + strand at 601.469 kb on + strand at 601.469 kb on + strand at 601.581 kb on + strand at 601.601 kb on - strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.627 kb on + strand at 601.628 kb on - strand at 601.632 kb on - strand at 601.721 kb on + strand at 601.722 kb on - strand at 601.722 kb on - strand at 601.764 kb on - strand, within Echvi_0540 at 601.807 kb on + strand, within Echvi_0540 at 601.859 kb on - strand, within Echvi_0540 at 601.859 kb on - strand, within Echvi_0540 at 601.889 kb on - strand, within Echvi_0540 at 601.947 kb on - strand, within Echvi_0540 at 601.984 kb on + strand, within Echvi_0540 at 601.984 kb on + strand, within Echvi_0540 at 601.986 kb on + strand, within Echvi_0540 at 601.986 kb on + strand, within Echvi_0540 at 601.986 kb on + strand, within Echvi_0540 at 601.987 kb on - strand, within Echvi_0540 at 601.987 kb on - strand, within Echvi_0540 at 602.015 kb on - strand, within Echvi_0540 at 602.024 kb on + strand, within Echvi_0540 at 602.201 kb on + strand, within Echvi_0540 at 602.261 kb on + strand, within Echvi_0540 at 602.262 kb on - strand, within Echvi_0540 at 602.296 kb on + strand, within Echvi_0540 at 602.319 kb on + strand, within Echvi_0540 at 602.319 kb on + strand, within Echvi_0540 at 602.319 kb on + strand, within Echvi_0540 at 602.320 kb on - strand, within Echvi_0540 at 602.414 kb on + strand, within Echvi_0540 at 602.462 kb on - strand, within Echvi_0540 at 602.464 kb on + strand, within Echvi_0540 at 602.464 kb on + strand, within Echvi_0540 at 602.464 kb on + strand, within Echvi_0540 at 602.465 kb on - strand, within Echvi_0540 at 602.465 kb on - strand, within Echvi_0540 at 602.465 kb on - strand, within Echvi_0540 at 602.577 kb on - strand, within Echvi_0540 at 602.610 kb on - strand, within Echvi_0540 at 602.684 kb on + strand, within Echvi_0540 at 602.740 kb on + strand, within Echvi_0540 at 602.740 kb on + strand, within Echvi_0540 at 602.740 kb on + strand, within Echvi_0540 at 602.741 kb on - strand, within Echvi_0540 at 602.741 kb on - strand, within Echvi_0540 at 602.741 kb on - strand, within Echvi_0540 at 602.741 kb on - strand, within Echvi_0540 at 602.796 kb on - strand, within Echvi_0540 at 602.802 kb on - strand, within Echvi_0540 at 602.814 kb on - strand, within Echvi_0540 at 602.814 kb on - strand, within Echvi_0540 at 602.828 kb on + strand, within Echvi_0540 at 602.833 kb on - strand, within Echvi_0540 at 602.833 kb on - strand, within Echvi_0540 at 602.976 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.012 kb on - strand at 603.013 kb on + strand at 603.013 kb on + strand at 603.014 kb on - strand at 603.014 kb on - strand at 603.014 kb on - strand at 603.014 kb on - strand at 603.015 kb on + strand at 603.016 kb on - strand at 603.033 kb on + strand at 603.033 kb on + strand at 603.035 kb on + strand at 603.041 kb on + strand at 603.109 kb on + strand at 603.110 kb on - strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.113 kb on + strand at 603.114 kb on - strand at 603.114 kb on - strand at 603.116 kb on + strand at 603.190 kb on - strand at 603.195 kb on + strand at 603.216 kb on + strand at 603.216 kb on + strand at 603.217 kb on - strand at 603.220 kb on + strand at 603.221 kb on - strand at 603.221 kb on - strand at 603.288 kb on + strand at 603.394 kb on - strand, within Echvi_0541 at 603.413 kb on + strand, within Echvi_0541 at 603.413 kb on + strand, within Echvi_0541 at 603.414 kb on - strand, within Echvi_0541 at 603.417 kb on + strand, within Echvi_0541 at 603.417 kb on + strand, within Echvi_0541 at 603.417 kb on + strand, within Echvi_0541 at 603.418 kb on - strand, within Echvi_0541 at 603.566 kb on + strand, within Echvi_0541 at 603.566 kb on + strand, within Echvi_0541 at 603.566 kb on + strand, within Echvi_0541 at 603.566 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.568 kb on + strand, within Echvi_0541 at 603.569 kb on - strand, within Echvi_0541 at 603.569 kb on - strand, within Echvi_0541 at 603.569 kb on - strand, within Echvi_0541 at 603.569 kb on - strand, within Echvi_0541 at 603.599 kb on + strand, within Echvi_0541 at 603.599 kb on + strand, within Echvi_0541 at 603.599 kb on + strand, within Echvi_0541 at 603.622 kb on - strand, within Echvi_0541 at 603.622 kb on - strand, within Echvi_0541 at 603.637 kb on + strand, within Echvi_0541 at 603.637 kb on + strand, within Echvi_0541 at 603.689 kb on + strand, within Echvi_0541 at 603.690 kb on - strand, within Echvi_0541 at 603.690 kb on - strand, within Echvi_0541 at 603.690 kb on - strand, within Echvi_0541 at 603.690 kb on - strand, within Echvi_0541 at 603.728 kb on + strand, within Echvi_0541 at 603.728 kb on + strand, within Echvi_0541 at 603.732 kb on + strand, within Echvi_0541 at 603.732 kb on + strand, within Echvi_0541 at 603.788 kb on + strand, within Echvi_0541 at 603.791 kb on + strand, within Echvi_0541 at 603.835 kb on + strand, within Echvi_0541 at 603.835 kb on + strand, within Echvi_0541 at 603.835 kb on + strand, within Echvi_0541 at 603.836 kb on - strand, within Echvi_0541 at 603.878 kb on + strand, within Echvi_0541 at 603.878 kb on + strand, within Echvi_0541 at 603.878 kb on + strand, within Echvi_0541 at 603.879 kb on - strand, within Echvi_0541 at 603.879 kb on - strand, within Echvi_0541 at 603.879 kb on - strand, within Echvi_0541 at 603.880 kb on + strand, within Echvi_0541 at 603.880 kb on + strand, within Echvi_0541 at 603.880 kb on + strand, within Echvi_0541 at 603.881 kb on - strand, within Echvi_0541 at 603.881 kb on - strand, within Echvi_0541 at 603.906 kb on + strand, within Echvi_0541 at 603.920 kb on + strand, within Echvi_0541 at 603.920 kb on + strand, within Echvi_0541 at 603.925 kb on - strand, within Echvi_0541 at 603.925 kb on - strand, within Echvi_0541 at 603.927 kb on + strand, within Echvi_0541 at 603.927 kb on + strand, within Echvi_0541 at 603.928 kb on - strand, within Echvi_0541 at 603.936 kb on + strand, within Echvi_0541 at 603.937 kb on - strand, within Echvi_0541 at 603.937 kb on - strand, within Echvi_0541 at 603.937 kb on - strand, within Echvi_0541 at 603.937 kb on - strand, within Echvi_0541 at 604.000 kb on + strand, within Echvi_0541 at 604.001 kb on - strand, within Echvi_0541 at 604.001 kb on - strand, within Echvi_0541 at 604.004 kb on - strand, within Echvi_0541 at 604.004 kb on - strand, within Echvi_0541 at 604.013 kb on + strand, within Echvi_0541 at 604.022 kb on + strand, within Echvi_0541
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml remove 600,664 + Echvi_0538 0.55 +0.4 600,942 - Echvi_0538 0.90 -2.3 600,942 - Echvi_0538 0.90 +0.3 600,960 + -0.5 600,960 + +0.1 601,019 - +0.2 601,020 + +0.9 601,020 + +0.4 601,021 - -0.4 601,027 - Echvi_0539 0.13 -0.7 601,079 - Echvi_0539 0.26 +1.1 601,079 - Echvi_0539 0.26 +0.3 601,114 + Echvi_0539 0.35 -1.4 601,151 - Echvi_0539 0.44 +0.7 601,156 + Echvi_0539 0.45 +0.3 601,157 - Echvi_0539 0.45 -0.3 601,175 - Echvi_0539 0.50 -1.2 601,175 - Echvi_0539 0.50 +0.8 601,241 + Echvi_0539 0.66 -0.7 601,241 + Echvi_0539 0.66 +0.6 601,245 - Echvi_0539 0.67 -0.0 601,332 - Echvi_0539 0.88 +2.1 601,372 + -1.4 601,372 + +1.2 601,373 - +0.7 601,377 + -1.0 601,377 + -0.6 601,377 + +0.4 601,377 + +0.2 601,378 - +0.1 601,378 - -0.2 601,378 - -1.5 601,378 - +0.1 601,459 + +1.0 601,460 - +0.6 601,460 - +1.3 601,460 - +0.6 601,469 + +0.4 601,469 + -0.9 601,469 + -0.3 601,581 + -1.1 601,601 - -0.4 601,627 + -0.9 601,627 + -0.6 601,627 + -0.6 601,627 + +0.1 601,627 + +0.2 601,628 - +0.4 601,632 - +0.7 601,721 + +1.2 601,722 - -1.0 601,722 - +0.4 601,764 - Echvi_0540 0.12 -1.5 601,807 + Echvi_0540 0.15 -0.3 601,859 - Echvi_0540 0.18 -1.4 601,859 - Echvi_0540 0.18 +0.3 601,889 - Echvi_0540 0.20 -1.0 601,947 - Echvi_0540 0.24 -0.8 601,984 + Echvi_0540 0.27 +0.6 601,984 + Echvi_0540 0.27 +0.3 601,986 + Echvi_0540 0.27 -1.6 601,986 + Echvi_0540 0.27 +0.0 601,986 + Echvi_0540 0.27 -1.2 601,987 - Echvi_0540 0.27 +1.2 601,987 - Echvi_0540 0.27 -0.7 602,015 - Echvi_0540 0.29 +0.2 602,024 + Echvi_0540 0.30 +0.1 602,201 + Echvi_0540 0.42 +0.2 602,261 + Echvi_0540 0.46 -0.1 602,262 - Echvi_0540 0.46 +0.1 602,296 + Echvi_0540 0.49 -0.8 602,319 + Echvi_0540 0.50 +0.1 602,319 + Echvi_0540 0.50 +1.2 602,319 + Echvi_0540 0.50 -0.2 602,320 - Echvi_0540 0.50 -0.8 602,414 + Echvi_0540 0.57 -0.3 602,462 - Echvi_0540 0.60 -0.7 602,464 + Echvi_0540 0.60 +0.2 602,464 + Echvi_0540 0.60 +0.5 602,464 + Echvi_0540 0.60 +0.7 602,465 - Echvi_0540 0.60 -0.5 602,465 - Echvi_0540 0.60 -0.1 602,465 - Echvi_0540 0.60 -0.5 602,577 - Echvi_0540 0.68 +0.9 602,610 - Echvi_0540 0.71 -1.3 602,684 + Echvi_0540 0.76 +0.6 602,740 + Echvi_0540 0.80 +0.3 602,740 + Echvi_0540 0.80 +1.7 602,740 + Echvi_0540 0.80 -0.4 602,741 - Echvi_0540 0.80 +1.4 602,741 - Echvi_0540 0.80 -0.0 602,741 - Echvi_0540 0.80 -0.4 602,741 - Echvi_0540 0.80 +0.1 602,796 - Echvi_0540 0.83 +0.4 602,802 - Echvi_0540 0.84 -0.8 602,814 - Echvi_0540 0.85 -1.4 602,814 - Echvi_0540 0.85 +0.2 602,828 + Echvi_0540 0.86 -1.0 602,833 - Echvi_0540 0.86 +1.1 602,833 - Echvi_0540 0.86 -0.2 602,976 - -0.3 603,012 - -0.2 603,012 - +1.1 603,012 - +0.3 603,012 - -0.3 603,012 - -1.3 603,012 - +0.5 603,013 + -1.1 603,013 + -0.5 603,014 - +0.2 603,014 - -1.0 603,014 - +1.1 603,014 - -0.7 603,015 + +0.1 603,016 - -0.8 603,033 + -0.9 603,033 + +0.7 603,035 + -0.3 603,041 + +0.2 603,109 + -0.2 603,110 - +0.8 603,113 + +0.9 603,113 + -0.2 603,113 + +0.3 603,113 + +1.1 603,113 + -0.2 603,113 + +0.5 603,113 + +1.0 603,114 - -0.6 603,114 - -2.4 603,116 + +3.1 603,190 - -0.7 603,195 + -1.7 603,216 + +0.1 603,216 + -0.9 603,217 - -0.5 603,220 + +0.4 603,221 - -0.6 603,221 - -0.9 603,288 + -0.6 603,394 - Echvi_0541 0.12 -2.2 603,413 + Echvi_0541 0.12 -0.5 603,413 + Echvi_0541 0.12 +1.0 603,414 - Echvi_0541 0.12 -0.9 603,417 + Echvi_0541 0.12 -0.1 603,417 + Echvi_0541 0.12 -0.5 603,417 + Echvi_0541 0.12 +0.6 603,418 - Echvi_0541 0.12 -1.4 603,566 + Echvi_0541 0.17 -1.3 603,566 + Echvi_0541 0.17 +0.1 603,566 + Echvi_0541 0.17 +0.6 603,566 + Echvi_0541 0.17 -1.2 603,568 + Echvi_0541 0.17 +0.3 603,568 + Echvi_0541 0.17 +1.8 603,568 + Echvi_0541 0.17 -0.4 603,568 + Echvi_0541 0.17 +0.4 603,568 + Echvi_0541 0.17 -0.2 603,569 - Echvi_0541 0.17 +0.3 603,569 - Echvi_0541 0.17 +0.4 603,569 - Echvi_0541 0.17 -0.7 603,569 - Echvi_0541 0.17 -1.2 603,599 + Echvi_0541 0.18 -0.2 603,599 + Echvi_0541 0.18 +0.2 603,599 + Echvi_0541 0.18 +0.9 603,622 - Echvi_0541 0.19 -0.7 603,622 - Echvi_0541 0.19 +0.5 603,637 + Echvi_0541 0.19 -2.2 603,637 + Echvi_0541 0.19 -1.1 603,689 + Echvi_0541 0.21 +2.3 603,690 - Echvi_0541 0.21 -2.3 603,690 - Echvi_0541 0.21 -2.0 603,690 - Echvi_0541 0.21 +0.5 603,690 - Echvi_0541 0.21 -0.3 603,728 + Echvi_0541 0.22 -0.3 603,728 + Echvi_0541 0.22 -0.5 603,732 + Echvi_0541 0.22 -1.3 603,732 + Echvi_0541 0.22 -0.3 603,788 + Echvi_0541 0.24 -0.5 603,791 + Echvi_0541 0.24 +1.0 603,835 + Echvi_0541 0.26 +0.3 603,835 + Echvi_0541 0.26 +0.5 603,835 + Echvi_0541 0.26 +0.1 603,836 - Echvi_0541 0.26 +2.2 603,878 + Echvi_0541 0.27 +0.3 603,878 + Echvi_0541 0.27 -1.0 603,878 + Echvi_0541 0.27 -0.3 603,879 - Echvi_0541 0.27 -1.6 603,879 - Echvi_0541 0.27 -0.1 603,879 - Echvi_0541 0.27 +0.1 603,880 + Echvi_0541 0.27 -1.1 603,880 + Echvi_0541 0.27 +0.0 603,880 + Echvi_0541 0.27 +0.8 603,881 - Echvi_0541 0.27 +0.4 603,881 - Echvi_0541 0.27 -0.6 603,906 + Echvi_0541 0.28 +0.6 603,920 + Echvi_0541 0.28 +0.7 603,920 + Echvi_0541 0.28 +0.7 603,925 - Echvi_0541 0.28 -0.9 603,925 - Echvi_0541 0.28 -0.1 603,927 + Echvi_0541 0.28 -0.0 603,927 + Echvi_0541 0.28 -0.9 603,928 - Echvi_0541 0.29 +1.7 603,936 + Echvi_0541 0.29 +0.2 603,937 - Echvi_0541 0.29 -0.1 603,937 - Echvi_0541 0.29 -0.8 603,937 - Echvi_0541 0.29 +1.1 603,937 - Echvi_0541 0.29 +0.3 604,000 + Echvi_0541 0.31 -0.0 604,001 - Echvi_0541 0.31 +1.4 604,001 - Echvi_0541 0.31 -1.0 604,004 - Echvi_0541 0.31 -0.7 604,004 - Echvi_0541 0.31 -1.5 604,013 + Echvi_0541 0.31 -1.9 604,022 + Echvi_0541 0.32 -0.3
Or see this region's nucleotide sequence