Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0534

Experiment: m.b. Polymyxin B sulfate 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0528 and Echvi_0529 are separated by 8 nucleotidesEchvi_0529 and Echvi_0530 are separated by 45 nucleotidesEchvi_0530 and Echvi_0531 are separated by 8 nucleotidesEchvi_0531 and Echvi_0532 are separated by 45 nucleotidesEchvi_0532 and Echvi_0533 are separated by 48 nucleotidesEchvi_0533 and Echvi_0534 are separated by 47 nucleotidesEchvi_0534 and Echvi_0535 are separated by 142 nucleotides Echvi_0528: Echvi_0528 - tRNA, at 595,767 to 595,843 _0528 Echvi_0529: Echvi_0529 - Predicted endonuclease containing a URI domain, at 595,852 to 596,106 _0529 Echvi_0530: Echvi_0530 - tRNA, at 596,152 to 596,228 _0530 Echvi_0531: Echvi_0531 - Predicted endonuclease containing a URI domain, at 596,237 to 596,491 _0531 Echvi_0532: Echvi_0532 - tRNA, at 596,537 to 596,611 _0532 Echvi_0533: Echvi_0533 - tRNA, at 596,660 to 596,737 _0533 Echvi_0534: Echvi_0534 - tRNA, at 596,785 to 596,864 _0534 Echvi_0535: Echvi_0535 - NAD-dependent aldehyde dehydrogenases, at 597,007 to 598,551 _0535 Position (kb) 596 597Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 596.521 kb on + strandat 596.955 kb on + strandat 596.966 kb on + strandat 596.990 kb on + strandat 597.012 kb on + strandat 597.021 kb on + strandat 597.048 kb on + strandat 597.048 kb on + strandat 597.049 kb on - strandat 597.051 kb on + strandat 597.053 kb on + strandat 597.053 kb on + strandat 597.053 kb on + strandat 597.053 kb on + strandat 597.054 kb on - strandat 597.081 kb on + strandat 597.081 kb on + strandat 597.083 kb on + strandat 597.083 kb on + strandat 597.083 kb on + strandat 597.083 kb on + strandat 597.084 kb on - strandat 597.171 kb on + strand, within Echvi_0535at 597.180 kb on + strand, within Echvi_0535at 597.180 kb on + strand, within Echvi_0535at 597.282 kb on + strand, within Echvi_0535at 597.283 kb on - strand, within Echvi_0535at 597.316 kb on - strand, within Echvi_0535at 597.317 kb on + strand, within Echvi_0535at 597.318 kb on - strand, within Echvi_0535at 597.325 kb on - strand, within Echvi_0535at 597.329 kb on + strand, within Echvi_0535at 597.329 kb on + strand, within Echvi_0535at 597.330 kb on - strand, within Echvi_0535at 597.330 kb on - strand, within Echvi_0535at 597.330 kb on - strand, within Echvi_0535at 597.330 kb on - strand, within Echvi_0535at 597.388 kb on + strand, within Echvi_0535at 597.388 kb on + strand, within Echvi_0535at 597.388 kb on + strand, within Echvi_0535at 597.404 kb on + strand, within Echvi_0535at 597.404 kb on + strand, within Echvi_0535at 597.405 kb on - strand, within Echvi_0535at 597.405 kb on - strand, within Echvi_0535at 597.419 kb on + strand, within Echvi_0535at 597.419 kb on + strand, within Echvi_0535at 597.420 kb on - strand, within Echvi_0535at 597.420 kb on - strand, within Echvi_0535at 597.420 kb on - strand, within Echvi_0535at 597.452 kb on - strand, within Echvi_0535at 597.498 kb on - strand, within Echvi_0535at 597.520 kb on + strand, within Echvi_0535at 597.648 kb on + strand, within Echvi_0535at 597.648 kb on + strand, within Echvi_0535at 597.649 kb on - strand, within Echvi_0535at 597.649 kb on - strand, within Echvi_0535at 597.702 kb on + strand, within Echvi_0535at 597.702 kb on + strand, within Echvi_0535at 597.702 kb on + strand, within Echvi_0535at 597.703 kb on - strand, within Echvi_0535at 597.703 kb on - strand, within Echvi_0535at 597.703 kb on - strand, within Echvi_0535at 597.730 kb on - strand, within Echvi_0535at 597.732 kb on + strand, within Echvi_0535at 597.732 kb on + strand, within Echvi_0535at 597.732 kb on + strand, within Echvi_0535at 597.733 kb on - strand, within Echvi_0535at 597.733 kb on - strand, within Echvi_0535at 597.733 kb on - strand, within Echvi_0535at 597.769 kb on + strand, within Echvi_0535at 597.843 kb on + strand, within Echvi_0535

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml
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596,521 + -0.0
596,955 + +0.5
596,966 + +0.6
596,990 + +0.4
597,012 + +0.6
597,021 + -0.1
597,048 + +0.3
597,048 + -1.2
597,049 - +0.1
597,051 + +0.1
597,053 + -1.4
597,053 + -2.3
597,053 + +1.6
597,053 + -0.1
597,054 - -1.4
597,081 + -0.1
597,081 + -1.3
597,083 + -2.9
597,083 + +0.0
597,083 + -0.6
597,083 + -0.2
597,084 - -1.2
597,171 + Echvi_0535 0.11 +0.2
597,180 + Echvi_0535 0.11 +0.4
597,180 + Echvi_0535 0.11 -0.6
597,282 + Echvi_0535 0.18 -2.4
597,283 - Echvi_0535 0.18 -1.5
597,316 - Echvi_0535 0.20 +0.5
597,317 + Echvi_0535 0.20 -0.7
597,318 - Echvi_0535 0.20 -1.3
597,325 - Echvi_0535 0.21 -0.7
597,329 + Echvi_0535 0.21 -0.3
597,329 + Echvi_0535 0.21 +0.5
597,330 - Echvi_0535 0.21 -0.3
597,330 - Echvi_0535 0.21 -1.0
597,330 - Echvi_0535 0.21 +0.8
597,330 - Echvi_0535 0.21 -0.7
597,388 + Echvi_0535 0.25 -0.9
597,388 + Echvi_0535 0.25 -0.2
597,388 + Echvi_0535 0.25 +0.0
597,404 + Echvi_0535 0.26 -0.5
597,404 + Echvi_0535 0.26 -0.1
597,405 - Echvi_0535 0.26 +0.6
597,405 - Echvi_0535 0.26 -1.5
597,419 + Echvi_0535 0.27 -0.8
597,419 + Echvi_0535 0.27 +0.1
597,420 - Echvi_0535 0.27 +0.6
597,420 - Echvi_0535 0.27 -0.4
597,420 - Echvi_0535 0.27 -0.4
597,452 - Echvi_0535 0.29 +1.9
597,498 - Echvi_0535 0.32 -0.3
597,520 + Echvi_0535 0.33 -0.8
597,648 + Echvi_0535 0.41 +1.9
597,648 + Echvi_0535 0.41 +1.3
597,649 - Echvi_0535 0.42 -0.3
597,649 - Echvi_0535 0.42 +0.5
597,702 + Echvi_0535 0.45 +0.1
597,702 + Echvi_0535 0.45 -0.5
597,702 + Echvi_0535 0.45 -1.7
597,703 - Echvi_0535 0.45 -0.2
597,703 - Echvi_0535 0.45 -1.2
597,703 - Echvi_0535 0.45 -0.4
597,730 - Echvi_0535 0.47 +0.2
597,732 + Echvi_0535 0.47 +1.0
597,732 + Echvi_0535 0.47 -0.2
597,732 + Echvi_0535 0.47 -0.5
597,733 - Echvi_0535 0.47 -0.0
597,733 - Echvi_0535 0.47 +0.2
597,733 - Echvi_0535 0.47 -0.9
597,769 + Echvi_0535 0.49 -0.2
597,843 + Echvi_0535 0.54 +0.7

Or see this region's nucleotide sequence