Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0399

Experiment: m.b. Polymyxin B sulfate 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0398 and Echvi_0399 are separated by 290 nucleotidesEchvi_0399 and Echvi_0400 are separated by 11 nucleotides Echvi_0398: Echvi_0398 - Beta-glucosidase-related glycosidases, at 422,500 to 424,824 _0398 Echvi_0399: Echvi_0399 - Lysophospholipase L1 and related esterases, at 425,115 to 425,825 _0399 Echvi_0400: Echvi_0400 - hypothetical protein, at 425,837 to 428,392 _0400 Position (kb) 425 426Strain fitness (log2 ratio) -2 -1 0 1 2 3at 424.177 kb on + strand, within Echvi_0398at 424.177 kb on + strand, within Echvi_0398at 424.249 kb on + strand, within Echvi_0398at 424.249 kb on + strand, within Echvi_0398at 424.249 kb on + strand, within Echvi_0398at 424.249 kb on + strand, within Echvi_0398at 424.251 kb on + strand, within Echvi_0398at 424.305 kb on - strand, within Echvi_0398at 424.308 kb on - strand, within Echvi_0398at 424.308 kb on - strand, within Echvi_0398at 424.308 kb on - strand, within Echvi_0398at 424.479 kb on - strand, within Echvi_0398at 424.482 kb on - strand, within Echvi_0398at 424.514 kb on - strand, within Echvi_0398at 424.684 kb on + strandat 424.684 kb on + strandat 424.685 kb on - strandat 424.685 kb on - strandat 424.685 kb on - strandat 424.699 kb on + strandat 424.700 kb on - strandat 424.700 kb on - strandat 424.702 kb on - strandat 424.741 kb on - strandat 424.741 kb on - strandat 424.749 kb on + strandat 424.763 kb on - strandat 424.764 kb on + strandat 424.764 kb on + strandat 424.804 kb on - strandat 424.807 kb on - strandat 424.807 kb on - strandat 424.807 kb on - strandat 424.807 kb on - strandat 424.832 kb on + strandat 424.836 kb on + strandat 424.843 kb on + strandat 424.862 kb on + strandat 424.862 kb on + strandat 424.862 kb on + strandat 424.862 kb on + strandat 424.862 kb on + strandat 425.012 kb on + strandat 425.041 kb on + strandat 425.041 kb on + strandat 425.051 kb on + strandat 425.051 kb on + strandat 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.186 kb on + strand, within Echvi_0399at 425.187 kb on - strand, within Echvi_0399at 425.187 kb on - strand, within Echvi_0399at 425.187 kb on - strand, within Echvi_0399at 425.187 kb on - strand, within Echvi_0399at 425.188 kb on + strand, within Echvi_0399at 425.188 kb on + strand, within Echvi_0399at 425.189 kb on - strand, within Echvi_0399at 425.195 kb on + strand, within Echvi_0399at 425.195 kb on + strand, within Echvi_0399at 425.196 kb on - strand, within Echvi_0399at 425.196 kb on - strand, within Echvi_0399at 425.198 kb on + strand, within Echvi_0399at 425.199 kb on - strand, within Echvi_0399at 425.199 kb on - strand, within Echvi_0399at 425.199 kb on - strand, within Echvi_0399at 425.367 kb on + strand, within Echvi_0399at 425.367 kb on + strand, within Echvi_0399at 425.524 kb on + strand, within Echvi_0399at 425.588 kb on + strand, within Echvi_0399at 425.589 kb on - strand, within Echvi_0399at 425.596 kb on - strand, within Echvi_0399at 425.600 kb on + strand, within Echvi_0399at 425.601 kb on - strand, within Echvi_0399at 425.601 kb on - strand, within Echvi_0399at 425.603 kb on + strand, within Echvi_0399at 425.608 kb on + strand, within Echvi_0399at 425.738 kb on - strand, within Echvi_0399at 425.738 kb on - strand, within Echvi_0399at 425.747 kb on + strand, within Echvi_0399at 425.834 kb on + strandat 425.834 kb on + strandat 425.876 kb on + strandat 425.876 kb on + strandat 425.880 kb on + strandat 425.880 kb on + strandat 425.880 kb on + strandat 425.880 kb on + strandat 425.918 kb on + strandat 425.919 kb on - strandat 425.994 kb on + strandat 425.995 kb on - strandat 425.996 kb on + strandat 425.996 kb on + strandat 425.996 kb on + strandat 426.002 kb on + strandat 426.002 kb on + strandat 426.003 kb on - strandat 426.003 kb on - strandat 426.003 kb on - strandat 426.003 kb on - strandat 426.080 kb on + strandat 426.081 kb on - strandat 426.081 kb on - strandat 426.084 kb on - strandat 426.107 kb on + strand, within Echvi_0400at 426.144 kb on + strand, within Echvi_0400at 426.144 kb on + strand, within Echvi_0400at 426.144 kb on + strand, within Echvi_0400at 426.144 kb on + strand, within Echvi_0400at 426.144 kb on + strand, within Echvi_0400at 426.229 kb on + strand, within Echvi_0400at 426.364 kb on - strand, within Echvi_0400at 426.451 kb on - strand, within Echvi_0400at 426.546 kb on + strand, within Echvi_0400at 426.546 kb on + strand, within Echvi_0400at 426.547 kb on - strand, within Echvi_0400at 426.547 kb on - strand, within Echvi_0400at 426.641 kb on - strand, within Echvi_0400at 426.652 kb on - strand, within Echvi_0400at 426.668 kb on - strand, within Echvi_0400at 426.703 kb on + strand, within Echvi_0400at 426.708 kb on - strand, within Echvi_0400at 426.747 kb on + strand, within Echvi_0400at 426.747 kb on + strand, within Echvi_0400at 426.747 kb on + strand, within Echvi_0400at 426.748 kb on - strand, within Echvi_0400

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 1 mg/ml
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424,177 + Echvi_0398 0.72 +0.1
424,177 + Echvi_0398 0.72 +0.7
424,249 + Echvi_0398 0.75 +0.4
424,249 + Echvi_0398 0.75 +1.4
424,249 + Echvi_0398 0.75 +0.9
424,249 + Echvi_0398 0.75 -1.8
424,251 + Echvi_0398 0.75 -0.6
424,305 - Echvi_0398 0.78 -0.2
424,308 - Echvi_0398 0.78 +2.4
424,308 - Echvi_0398 0.78 -0.8
424,308 - Echvi_0398 0.78 -2.2
424,479 - Echvi_0398 0.85 -0.9
424,482 - Echvi_0398 0.85 -0.6
424,514 - Echvi_0398 0.87 +0.9
424,684 + -1.0
424,684 + -0.3
424,685 - +0.2
424,685 - +0.4
424,685 - -0.1
424,699 + +0.0
424,700 - -0.9
424,700 - +0.9
424,702 - +0.3
424,741 - +0.7
424,741 - +0.6
424,749 + -1.0
424,763 - +0.2
424,764 + +0.3
424,764 + +0.1
424,804 - -0.1
424,807 - +0.1
424,807 - -0.6
424,807 - -0.5
424,807 - -0.4
424,832 + +0.9
424,836 + +0.7
424,843 + +1.0
424,862 + -1.1
424,862 + +0.5
424,862 + +0.8
424,862 + +1.7
424,862 + +0.1
425,012 + +0.9
425,041 + -0.1
425,041 + +0.7
425,051 + -1.6
425,051 + +0.1
425,186 + Echvi_0399 0.10 -1.2
425,186 + Echvi_0399 0.10 -0.1
425,186 + Echvi_0399 0.10 +2.0
425,186 + Echvi_0399 0.10 -0.3
425,186 + Echvi_0399 0.10 -0.8
425,186 + Echvi_0399 0.10 -1.0
425,186 + Echvi_0399 0.10 +0.3
425,186 + Echvi_0399 0.10 -0.5
425,187 - Echvi_0399 0.10 +0.9
425,187 - Echvi_0399 0.10 -0.6
425,187 - Echvi_0399 0.10 +1.0
425,187 - Echvi_0399 0.10 +0.9
425,188 + Echvi_0399 0.10 -0.5
425,188 + Echvi_0399 0.10 +0.1
425,189 - Echvi_0399 0.10 -0.5
425,195 + Echvi_0399 0.11 +0.4
425,195 + Echvi_0399 0.11 +0.1
425,196 - Echvi_0399 0.11 +2.1
425,196 - Echvi_0399 0.11 -0.2
425,198 + Echvi_0399 0.12 +0.7
425,199 - Echvi_0399 0.12 -0.5
425,199 - Echvi_0399 0.12 +0.3
425,199 - Echvi_0399 0.12 -0.0
425,367 + Echvi_0399 0.35 +0.3
425,367 + Echvi_0399 0.35 +0.3
425,524 + Echvi_0399 0.58 +0.4
425,588 + Echvi_0399 0.67 -0.2
425,589 - Echvi_0399 0.67 -0.3
425,596 - Echvi_0399 0.68 +1.4
425,600 + Echvi_0399 0.68 +1.4
425,601 - Echvi_0399 0.68 -0.2
425,601 - Echvi_0399 0.68 +0.9
425,603 + Echvi_0399 0.69 -0.6
425,608 + Echvi_0399 0.69 +0.8
425,738 - Echvi_0399 0.88 -0.6
425,738 - Echvi_0399 0.88 +3.2
425,747 + Echvi_0399 0.89 +0.3
425,834 + +2.0
425,834 + +0.4
425,876 + +0.5
425,876 + +2.7
425,880 + +0.5
425,880 + -0.6
425,880 + -0.3
425,880 + +0.6
425,918 + +0.0
425,919 - +0.5
425,994 + +0.1
425,995 - -0.1
425,996 + +0.3
425,996 + +1.2
425,996 + +0.8
426,002 + -0.0
426,002 + +0.4
426,003 - +0.6
426,003 - -0.1
426,003 - -1.3
426,003 - -0.0
426,080 + -0.5
426,081 - +1.0
426,081 - -0.5
426,084 - +0.2
426,107 + Echvi_0400 0.11 -0.6
426,144 + Echvi_0400 0.12 +1.0
426,144 + Echvi_0400 0.12 +0.6
426,144 + Echvi_0400 0.12 +0.4
426,144 + Echvi_0400 0.12 +1.0
426,144 + Echvi_0400 0.12 +0.0
426,229 + Echvi_0400 0.15 +1.2
426,364 - Echvi_0400 0.21 -0.5
426,451 - Echvi_0400 0.24 +0.7
426,546 + Echvi_0400 0.28 -0.2
426,546 + Echvi_0400 0.28 -0.5
426,547 - Echvi_0400 0.28 -1.2
426,547 - Echvi_0400 0.28 +0.7
426,641 - Echvi_0400 0.31 -0.1
426,652 - Echvi_0400 0.32 -0.9
426,668 - Echvi_0400 0.33 +0.6
426,703 + Echvi_0400 0.34 -0.0
426,708 - Echvi_0400 0.34 -0.5
426,747 + Echvi_0400 0.36 +0.4
426,747 + Echvi_0400 0.36 -0.6
426,747 + Echvi_0400 0.36 +0.9
426,748 - Echvi_0400 0.36 -0.6

Or see this region's nucleotide sequence