Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0113

Experiment: m.b. Polymyxin B sulfate 1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Polymyxin B sulfate 1 mg/ml
106,404	-		Echvi_0111	0.88	+0.5
106,455	+				-0.6
106,532	+				-0.5
106,532	+				-1.2
106,577	+		Echvi_0112	0.13	+0.1
106,592	-		Echvi_0112	0.15	-0.1
106,649	+		Echvi_0112	0.21	+0.5
106,650	-		Echvi_0112	0.22	-1.1
106,650	-		Echvi_0112	0.22	-1.2
106,663	+		Echvi_0112	0.23	-0.0
106,678	+		Echvi_0112	0.25	+0.6
106,678	+		Echvi_0112	0.25	-0.5
106,679	-		Echvi_0112	0.25	+0.9
106,681	+		Echvi_0112	0.25	+0.6
106,690	+		Echvi_0112	0.26	+2.0
106,693	+		Echvi_0112	0.27	-0.0
106,719	+		Echvi_0112	0.30	-0.4
106,720	-		Echvi_0112	0.30	+0.0
106,734	-		Echvi_0112	0.31	-0.8
106,734	-		Echvi_0112	0.31	+1.1
106,755	+		Echvi_0112	0.34	-0.2
106,907	+		Echvi_0112	0.52	+0.6
106,907	+		Echvi_0112	0.52	-0.4
106,908	-		Echvi_0112	0.52	+0.0
106,908	-		Echvi_0112	0.52	-0.1
106,908	-		Echvi_0112	0.52	+0.9
106,910	+		Echvi_0112	0.52	+0.8
106,910	+		Echvi_0112	0.52	+0.6
106,911	-		Echvi_0112	0.52	+0.3
106,911	-		Echvi_0112	0.52	+1.1
106,938	+		Echvi_0112	0.55	-1.7
106,939	-		Echvi_0112	0.56	-0.9
106,981	-		Echvi_0112	0.60	+0.0
107,034	+		Echvi_0112	0.67	-2.0
107,035	-		Echvi_0112	0.67	-1.4
107,035	-		Echvi_0112	0.67	-0.7
107,035	-		Echvi_0112	0.67	-0.3
107,035	-		Echvi_0112	0.67	-0.0
107,038	+		Echvi_0112	0.67	+0.3
107,157	-		Echvi_0112	0.81	-0.3
107,167	+		Echvi_0112	0.82	-1.2
107,168	-		Echvi_0112	0.82	-0.7
107,332	+				-0.4
107,333	-				+0.2
107,333	-				-0.4
107,333	-				-0.5
107,367	+				-0.2
107,375	+				-0.4
107,376	-				-1.0
107,376	-				-0.7
107,376	-				+0.8
107,376	-				+0.6
107,377	+				+0.4
107,413	+				+0.1
107,531	+				-0.2
107,532	-				+1.3
107,552	+				+0.8
107,553	-				-0.1
107,563	-		Echvi_0113	0.10	+1.6
107,720	+		Echvi_0113	0.20	+1.0
107,741	+		Echvi_0113	0.21	-0.5
107,742	-		Echvi_0113	0.21	-0.4
107,756	+		Echvi_0113	0.22	+0.7
107,813	-		Echvi_0113	0.26	-0.0
107,868	+		Echvi_0113	0.29	+0.5
107,893	+		Echvi_0113	0.31	+0.7
107,894	-		Echvi_0113	0.31	-0.3
107,928	+		Echvi_0113	0.33	+0.5
107,928	+		Echvi_0113	0.33	+1.2
107,960	+		Echvi_0113	0.35	+1.3
108,046	+		Echvi_0113	0.40	+1.0
108,147	-		Echvi_0113	0.46	+0.5
108,147	-		Echvi_0113	0.46	+1.7
108,302	+		Echvi_0113	0.56	+0.8
108,302	+		Echvi_0113	0.56	+0.8
108,302	+		Echvi_0113	0.56	+2.1
108,303	-		Echvi_0113	0.56	+0.2
108,306	+		Echvi_0113	0.56	-0.5
108,306	+		Echvi_0113	0.56	-0.7
108,307	-		Echvi_0113	0.56	+0.3
108,379	+		Echvi_0113	0.61	+0.0
108,398	+		Echvi_0113	0.62	-1.0
108,416	-		Echvi_0113	0.63	+1.0
108,416	-		Echvi_0113	0.63	+0.4
108,467	+		Echvi_0113	0.66	-0.5
108,467	+		Echvi_0113	0.66	+1.7
108,467	+		Echvi_0113	0.66	+0.2
108,468	-		Echvi_0113	0.66	+1.4
108,468	-		Echvi_0113	0.66	+0.4
108,468	-		Echvi_0113	0.66	+1.2
108,535	-		Echvi_0113	0.70	+0.6
108,627	-		Echvi_0113	0.76	-1.3
108,755	-		Echvi_0113	0.84	-0.1
108,810	-		Echvi_0113	0.87	-0.0
108,869	+				+0.5
108,870	-				-0.8
109,027	-				+0.5
109,027	-				+1.0
109,027	-				+0.5
109,027	-				+0.8
109,027	-				+0.5
109,028	+				+0.1
109,028	+				+1.3
109,029	-				-0.5
109,056	+				+0.8
109,057	-				-1.2
109,195	+				+1.0
109,196	-				-2.2
109,231	+				-1.2
109,232	-				-0.9
109,333	+		Echvi_0114	0.20	-3.2
109,333	+		Echvi_0114	0.20	-0.9
109,333	+		Echvi_0114	0.20	-1.4
109,334	-		Echvi_0114	0.20	-4.0
109,418	+		Echvi_0114	0.31	-1.7
109,430	-		Echvi_0114	0.32	-1.8
109,459	+		Echvi_0114	0.36	-3.0
109,492	+		Echvi_0114	0.40	-3.6
109,504	+		Echvi_0114	0.42	-3.6
109,505	-		Echvi_0114	0.42	-1.0
109,543	-		Echvi_0114	0.47	-2.4
109,585	+		Echvi_0114	0.52	-1.4
109,585	+		Echvi_0114	0.52	-2.3
109,670	+		Echvi_0114	0.62	-1.6
109,695	-		Echvi_0114	0.66	-1.0
109,741	+		Echvi_0114	0.71	-3.3
109,741	+		Echvi_0114	0.71	-2.6
109,859	+		Echvi_0114	0.86	-4.0
109,942	-				-1.7
109,980	+				-0.5
109,980	+				-1.1
109,980	+				-1.3
109,986	+				-3.0