Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4456

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4455 and EX28DRAFT_4456 are separated by 50 nucleotidesEX28DRAFT_4456 and EX28DRAFT_4457 overlap by 4 nucleotides EX28DRAFT_4455: EX28DRAFT_4455 - Chain length determinant protein, at 21,887 to 22,933 _4455 EX28DRAFT_4456: EX28DRAFT_4456 - UDP-N-acetylglucosamine 2-epimerase, at 22,984 to 24,120 _4456 EX28DRAFT_4457: EX28DRAFT_4457 - nucleotide sugar dehydrogenase, at 24,117 to 25,379 _4457 Position (kb) 22 23 24 25Strain fitness (log2 ratio) -2 -1 0 1 2 3at 22.025 kb on + strand, within EX28DRAFT_4455at 22.025 kb on + strand, within EX28DRAFT_4455at 22.025 kb on + strand, within EX28DRAFT_4455at 22.027 kb on + strand, within EX28DRAFT_4455at 22.027 kb on + strand, within EX28DRAFT_4455at 22.028 kb on - strand, within EX28DRAFT_4455at 22.101 kb on - strand, within EX28DRAFT_4455at 22.104 kb on - strand, within EX28DRAFT_4455at 22.256 kb on + strand, within EX28DRAFT_4455at 22.257 kb on - strand, within EX28DRAFT_4455at 22.257 kb on - strand, within EX28DRAFT_4455at 22.276 kb on + strand, within EX28DRAFT_4455at 22.276 kb on + strand, within EX28DRAFT_4455at 22.418 kb on + strand, within EX28DRAFT_4455at 22.418 kb on + strand, within EX28DRAFT_4455at 22.456 kb on + strand, within EX28DRAFT_4455at 22.600 kb on + strand, within EX28DRAFT_4455at 22.730 kb on + strand, within EX28DRAFT_4455at 22.762 kb on + strand, within EX28DRAFT_4455at 22.799 kb on + strand, within EX28DRAFT_4455at 22.800 kb on - strand, within EX28DRAFT_4455at 22.800 kb on - strand, within EX28DRAFT_4455at 23.032 kb on - strandat 23.155 kb on + strand, within EX28DRAFT_4456at 23.163 kb on + strand, within EX28DRAFT_4456at 23.164 kb on - strand, within EX28DRAFT_4456at 23.166 kb on + strand, within EX28DRAFT_4456at 23.167 kb on - strand, within EX28DRAFT_4456at 23.167 kb on - strand, within EX28DRAFT_4456at 23.265 kb on - strand, within EX28DRAFT_4456at 23.503 kb on - strand, within EX28DRAFT_4456at 23.806 kb on + strand, within EX28DRAFT_4456at 24.049 kb on - strandat 24.096 kb on + strandat 24.153 kb on + strandat 24.154 kb on - strandat 24.154 kb on - strandat 24.233 kb on - strandat 24.535 kb on + strand, within EX28DRAFT_4457at 24.535 kb on + strand, within EX28DRAFT_4457at 24.849 kb on - strand, within EX28DRAFT_4457at 25.025 kb on + strand, within EX28DRAFT_4457

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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22,025 + EX28DRAFT_4455 0.13 +1.5
22,025 + EX28DRAFT_4455 0.13 -0.5
22,025 + EX28DRAFT_4455 0.13 -0.8
22,027 + EX28DRAFT_4455 0.13 +0.7
22,027 + EX28DRAFT_4455 0.13 -2.0
22,028 - EX28DRAFT_4455 0.13 -0.3
22,101 - EX28DRAFT_4455 0.20 +0.2
22,104 - EX28DRAFT_4455 0.21 -0.4
22,256 + EX28DRAFT_4455 0.35 -0.4
22,257 - EX28DRAFT_4455 0.35 +1.1
22,257 - EX28DRAFT_4455 0.35 +0.3
22,276 + EX28DRAFT_4455 0.37 -0.3
22,276 + EX28DRAFT_4455 0.37 +0.0
22,418 + EX28DRAFT_4455 0.51 -0.6
22,418 + EX28DRAFT_4455 0.51 +2.9
22,456 + EX28DRAFT_4455 0.54 -0.1
22,600 + EX28DRAFT_4455 0.68 +0.4
22,730 + EX28DRAFT_4455 0.81 -0.7
22,762 + EX28DRAFT_4455 0.84 -0.2
22,799 + EX28DRAFT_4455 0.87 -0.4
22,800 - EX28DRAFT_4455 0.87 -0.1
22,800 - EX28DRAFT_4455 0.87 +0.3
23,032 - +0.9
23,155 + EX28DRAFT_4456 0.15 +0.4
23,163 + EX28DRAFT_4456 0.16 +2.0
23,164 - EX28DRAFT_4456 0.16 +0.3
23,166 + EX28DRAFT_4456 0.16 +0.3
23,167 - EX28DRAFT_4456 0.16 +0.8
23,167 - EX28DRAFT_4456 0.16 +0.3
23,265 - EX28DRAFT_4456 0.25 +0.4
23,503 - EX28DRAFT_4456 0.46 +0.5
23,806 + EX28DRAFT_4456 0.72 +0.1
24,049 - +0.5
24,096 + +1.5
24,153 + +0.4
24,154 - +0.1
24,154 - +0.4
24,233 - +0.1
24,535 + EX28DRAFT_4457 0.33 +2.6
24,535 + EX28DRAFT_4457 0.33 +0.4
24,849 - EX28DRAFT_4457 0.58 +0.9
25,025 + EX28DRAFT_4457 0.72 +0.3

Or see this region's nucleotide sequence