Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4266

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4264 and EX28DRAFT_4265 are separated by 172 nucleotidesEX28DRAFT_4265 and EX28DRAFT_4266 are separated by 115 nucleotidesEX28DRAFT_4266 and EX28DRAFT_4267 are separated by 69 nucleotidesEX28DRAFT_4267 and EX28DRAFT_4268 are separated by 117 nucleotides EX28DRAFT_4264: EX28DRAFT_4264 - F plasmid transfer operon, TraF, protein, at 68,948 to 70,258 _4264 EX28DRAFT_4265: EX28DRAFT_4265 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 70,431 to 70,919 _4265 EX28DRAFT_4266: EX28DRAFT_4266 - Fe2+/Zn2+ uptake regulation proteins, at 71,035 to 71,547 _4266 EX28DRAFT_4267: EX28DRAFT_4267 - Uncharacterized protein conserved in bacteria, at 71,617 to 71,829 _4267 EX28DRAFT_4268: EX28DRAFT_4268 - putative efflux protein, MATE family, at 71,947 to 73,284 _4268 Position (kb) 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 70.123 kb on - strand, within EX28DRAFT_4264at 70.123 kb on - strand, within EX28DRAFT_4264at 70.181 kb on - strandat 70.272 kb on + strandat 70.272 kb on + strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.273 kb on - strandat 70.323 kb on + strandat 70.336 kb on - strandat 70.339 kb on + strandat 70.340 kb on - strandat 70.340 kb on - strandat 70.371 kb on - strandat 70.371 kb on - strandat 70.414 kb on - strandat 70.513 kb on + strand, within EX28DRAFT_4265at 70.513 kb on + strand, within EX28DRAFT_4265at 70.515 kb on + strand, within EX28DRAFT_4265at 70.516 kb on - strand, within EX28DRAFT_4265at 70.535 kb on - strand, within EX28DRAFT_4265at 70.535 kb on - strand, within EX28DRAFT_4265at 70.535 kb on - strand, within EX28DRAFT_4265at 70.672 kb on + strand, within EX28DRAFT_4265at 70.673 kb on - strand, within EX28DRAFT_4265at 70.712 kb on - strand, within EX28DRAFT_4265at 70.747 kb on + strand, within EX28DRAFT_4265at 70.747 kb on + strand, within EX28DRAFT_4265at 70.787 kb on + strand, within EX28DRAFT_4265at 70.924 kb on + strandat 70.924 kb on + strandat 70.925 kb on - strandat 70.953 kb on - strandat 70.953 kb on - strandat 70.995 kb on - strandat 71.015 kb on + strandat 71.015 kb on + strandat 71.040 kb on + strandat 71.389 kb on - strand, within EX28DRAFT_4266at 71.391 kb on + strand, within EX28DRAFT_4266at 71.392 kb on - strand, within EX28DRAFT_4266at 71.587 kb on + strandat 71.587 kb on + strandat 71.588 kb on - strandat 71.598 kb on - strandat 71.627 kb on + strandat 71.654 kb on - strand, within EX28DRAFT_4267at 71.742 kb on + strand, within EX28DRAFT_4267at 71.821 kb on - strandat 72.132 kb on + strand, within EX28DRAFT_4268at 72.183 kb on - strand, within EX28DRAFT_4268at 72.265 kb on - strand, within EX28DRAFT_4268at 72.265 kb on - strand, within EX28DRAFT_4268at 72.389 kb on + strand, within EX28DRAFT_4268at 72.412 kb on + strand, within EX28DRAFT_4268at 72.420 kb on - strand, within EX28DRAFT_4268

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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70,123 - EX28DRAFT_4264 0.90 -0.7
70,123 - EX28DRAFT_4264 0.90 -0.0
70,181 - -1.3
70,272 + +0.2
70,272 + +0.6
70,273 - -0.1
70,273 - -0.1
70,273 - +0.8
70,323 + -0.4
70,336 - -0.4
70,339 + -0.7
70,340 - +0.5
70,340 - -0.3
70,371 - -0.7
70,371 - -0.0
70,414 - +0.0
70,513 + EX28DRAFT_4265 0.17 +0.5
70,513 + EX28DRAFT_4265 0.17 +0.7
70,515 + EX28DRAFT_4265 0.17 +0.1
70,516 - EX28DRAFT_4265 0.17 -0.0
70,535 - EX28DRAFT_4265 0.21 +2.1
70,535 - EX28DRAFT_4265 0.21 -0.3
70,535 - EX28DRAFT_4265 0.21 +0.1
70,672 + EX28DRAFT_4265 0.49 +0.2
70,673 - EX28DRAFT_4265 0.49 -0.2
70,712 - EX28DRAFT_4265 0.57 +0.6
70,747 + EX28DRAFT_4265 0.65 -0.8
70,747 + EX28DRAFT_4265 0.65 -3.0
70,787 + EX28DRAFT_4265 0.73 -0.3
70,924 + -0.1
70,924 + -0.3
70,925 - -0.1
70,953 - +0.4
70,953 - -0.3
70,995 - +0.4
71,015 + -0.7
71,015 + +0.4
71,040 + -1.1
71,389 - EX28DRAFT_4266 0.69 -2.2
71,391 + EX28DRAFT_4266 0.69 -2.5
71,392 - EX28DRAFT_4266 0.70 -0.7
71,587 + +0.2
71,587 + -0.1
71,588 - -0.1
71,598 - +0.9
71,627 + +0.4
71,654 - EX28DRAFT_4267 0.17 +0.1
71,742 + EX28DRAFT_4267 0.59 -0.2
71,821 - -0.7
72,132 + EX28DRAFT_4268 0.14 -0.7
72,183 - EX28DRAFT_4268 0.18 -0.2
72,265 - EX28DRAFT_4268 0.24 -2.1
72,265 - EX28DRAFT_4268 0.24 +0.2
72,389 + EX28DRAFT_4268 0.33 +0.1
72,412 + EX28DRAFT_4268 0.35 -0.3
72,420 - EX28DRAFT_4268 0.35 +0.3

Or see this region's nucleotide sequence