Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4178

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4177 and EX28DRAFT_4178 are separated by 138 nucleotidesEX28DRAFT_4178 and EX28DRAFT_4179 overlap by 1 nucleotides EX28DRAFT_4177: EX28DRAFT_4177 - ATPase components of ABC transporters with duplicated ATPase domains, at 159,959 to 161,863 _4177 EX28DRAFT_4178: EX28DRAFT_4178 - Putative NADPH-quinone reductase (modulator of drug activity B), at 162,002 to 162,553 _4178 EX28DRAFT_4179: EX28DRAFT_4179 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 162,553 to 164,358 _4179 Position (kb) 162 163Strain fitness (log2 ratio) -1 0 1 2 3at 161.118 kb on + strand, within EX28DRAFT_4177at 161.119 kb on - strand, within EX28DRAFT_4177at 161.172 kb on + strand, within EX28DRAFT_4177at 161.172 kb on + strand, within EX28DRAFT_4177at 161.173 kb on - strand, within EX28DRAFT_4177at 161.280 kb on + strand, within EX28DRAFT_4177at 161.309 kb on - strand, within EX28DRAFT_4177at 161.389 kb on + strand, within EX28DRAFT_4177at 161.390 kb on - strand, within EX28DRAFT_4177at 161.390 kb on - strand, within EX28DRAFT_4177at 161.398 kb on + strand, within EX28DRAFT_4177at 161.465 kb on + strand, within EX28DRAFT_4177at 161.617 kb on - strand, within EX28DRAFT_4177at 161.617 kb on - strand, within EX28DRAFT_4177at 161.690 kb on - strandat 161.798 kb on - strandat 161.863 kb on + strandat 161.864 kb on - strandat 161.864 kb on - strandat 161.886 kb on - strandat 161.886 kb on - strandat 161.890 kb on + strandat 161.890 kb on + strandat 161.891 kb on - strandat 161.907 kb on - strandat 161.907 kb on - strandat 161.911 kb on + strandat 161.911 kb on + strandat 161.911 kb on + strandat 161.912 kb on - strandat 161.912 kb on - strandat 161.912 kb on - strandat 161.912 kb on - strandat 162.032 kb on + strandat 162.033 kb on - strandat 162.214 kb on + strand, within EX28DRAFT_4178at 162.214 kb on + strand, within EX28DRAFT_4178at 162.214 kb on + strand, within EX28DRAFT_4178at 162.214 kb on + strand, within EX28DRAFT_4178at 162.215 kb on - strand, within EX28DRAFT_4178at 162.215 kb on - strand, within EX28DRAFT_4178at 162.215 kb on - strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.218 kb on + strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.219 kb on - strand, within EX28DRAFT_4178at 162.220 kb on + strand, within EX28DRAFT_4178at 162.220 kb on + strand, within EX28DRAFT_4178at 162.221 kb on - strand, within EX28DRAFT_4178at 162.221 kb on - strand, within EX28DRAFT_4178at 162.221 kb on - strand, within EX28DRAFT_4178at 162.451 kb on + strand, within EX28DRAFT_4178at 162.510 kb on - strandat 162.570 kb on - strandat 162.813 kb on - strand, within EX28DRAFT_4179at 162.813 kb on - strand, within EX28DRAFT_4179at 163.284 kb on + strand, within EX28DRAFT_4179at 163.364 kb on + strand, within EX28DRAFT_4179at 163.365 kb on - strand, within EX28DRAFT_4179at 163.377 kb on + strand, within EX28DRAFT_4179at 163.414 kb on + strand, within EX28DRAFT_4179at 163.415 kb on - strand, within EX28DRAFT_4179at 163.480 kb on + strand, within EX28DRAFT_4179at 163.480 kb on + strand, within EX28DRAFT_4179at 163.481 kb on - strand, within EX28DRAFT_4179at 163.494 kb on + strand, within EX28DRAFT_4179at 163.494 kb on + strand, within EX28DRAFT_4179at 163.495 kb on - strand, within EX28DRAFT_4179at 163.495 kb on - strand, within EX28DRAFT_4179at 163.498 kb on + strand, within EX28DRAFT_4179at 163.542 kb on - strand, within EX28DRAFT_4179

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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161,118 + EX28DRAFT_4177 0.61 -0.3
161,119 - EX28DRAFT_4177 0.61 -0.5
161,172 + EX28DRAFT_4177 0.64 +0.0
161,172 + EX28DRAFT_4177 0.64 +0.3
161,173 - EX28DRAFT_4177 0.64 +0.1
161,280 + EX28DRAFT_4177 0.69 -0.0
161,309 - EX28DRAFT_4177 0.71 -1.0
161,389 + EX28DRAFT_4177 0.75 +0.4
161,390 - EX28DRAFT_4177 0.75 -0.1
161,390 - EX28DRAFT_4177 0.75 +0.5
161,398 + EX28DRAFT_4177 0.76 -0.2
161,465 + EX28DRAFT_4177 0.79 -1.2
161,617 - EX28DRAFT_4177 0.87 -0.3
161,617 - EX28DRAFT_4177 0.87 -0.0
161,690 - -0.3
161,798 - -0.1
161,863 + -0.3
161,864 - -0.4
161,864 - -0.0
161,886 - -0.0
161,886 - -0.0
161,890 + -0.2
161,890 + -0.7
161,891 - +0.3
161,907 - -0.4
161,907 - +1.0
161,911 + +0.1
161,911 + -0.1
161,911 + +0.5
161,912 - -0.0
161,912 - -0.2
161,912 - -0.1
161,912 - +3.7
162,032 + +0.4
162,033 - -1.1
162,214 + EX28DRAFT_4178 0.38 +0.5
162,214 + EX28DRAFT_4178 0.38 +0.3
162,214 + EX28DRAFT_4178 0.38 -0.1
162,214 + EX28DRAFT_4178 0.38 +0.6
162,215 - EX28DRAFT_4178 0.39 +0.1
162,215 - EX28DRAFT_4178 0.39 +1.0
162,215 - EX28DRAFT_4178 0.39 -0.1
162,218 + EX28DRAFT_4178 0.39 -0.5
162,218 + EX28DRAFT_4178 0.39 +0.4
162,218 + EX28DRAFT_4178 0.39 +0.3
162,218 + EX28DRAFT_4178 0.39 +0.4
162,218 + EX28DRAFT_4178 0.39 +0.7
162,218 + EX28DRAFT_4178 0.39 +0.4
162,218 + EX28DRAFT_4178 0.39 +1.5
162,218 + EX28DRAFT_4178 0.39 +0.0
162,218 + EX28DRAFT_4178 0.39 +0.7
162,218 + EX28DRAFT_4178 0.39 +0.2
162,219 - EX28DRAFT_4178 0.39 +1.1
162,219 - EX28DRAFT_4178 0.39 +1.5
162,219 - EX28DRAFT_4178 0.39 +0.2
162,219 - EX28DRAFT_4178 0.39 +0.3
162,219 - EX28DRAFT_4178 0.39 +0.3
162,219 - EX28DRAFT_4178 0.39 -1.1
162,219 - EX28DRAFT_4178 0.39 +0.2
162,219 - EX28DRAFT_4178 0.39 +0.1
162,219 - EX28DRAFT_4178 0.39 +0.4
162,219 - EX28DRAFT_4178 0.39 -0.2
162,219 - EX28DRAFT_4178 0.39 +0.2
162,219 - EX28DRAFT_4178 0.39 -0.6
162,219 - EX28DRAFT_4178 0.39 +0.2
162,220 + EX28DRAFT_4178 0.39 +0.8
162,220 + EX28DRAFT_4178 0.39 +0.5
162,221 - EX28DRAFT_4178 0.40 +0.4
162,221 - EX28DRAFT_4178 0.40 -0.4
162,221 - EX28DRAFT_4178 0.40 +0.5
162,451 + EX28DRAFT_4178 0.81 -0.3
162,510 - +0.0
162,570 - +0.4
162,813 - EX28DRAFT_4179 0.14 -0.2
162,813 - EX28DRAFT_4179 0.14 -0.3
163,284 + EX28DRAFT_4179 0.40 -0.1
163,364 + EX28DRAFT_4179 0.45 +0.1
163,365 - EX28DRAFT_4179 0.45 +0.1
163,377 + EX28DRAFT_4179 0.46 -0.5
163,414 + EX28DRAFT_4179 0.48 -0.4
163,415 - EX28DRAFT_4179 0.48 -0.3
163,480 + EX28DRAFT_4179 0.51 +0.1
163,480 + EX28DRAFT_4179 0.51 +0.1
163,481 - EX28DRAFT_4179 0.51 -0.9
163,494 + EX28DRAFT_4179 0.52 +0.6
163,494 + EX28DRAFT_4179 0.52 +0.3
163,495 - EX28DRAFT_4179 0.52 +1.5
163,495 - EX28DRAFT_4179 0.52 -0.0
163,498 + EX28DRAFT_4179 0.52 +0.2
163,542 - EX28DRAFT_4179 0.55 +0.1

Or see this region's nucleotide sequence