Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4116

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4115 and EX28DRAFT_4116 overlap by 4 nucleotidesEX28DRAFT_4116 and EX28DRAFT_4117 are separated by 17 nucleotides EX28DRAFT_4115: EX28DRAFT_4115 - alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase, at 86,070 to 88,346 _4115 EX28DRAFT_4116: EX28DRAFT_4116 - glycogen debranching enzyme GlgX, at 88,343 to 90,316 _4116 EX28DRAFT_4117: EX28DRAFT_4117 - glucose-1-phosphate adenylyltransferase, at 90,334 to 91,629 _4117 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 87.594 kb on + strand, within EX28DRAFT_4115at 87.595 kb on - strand, within EX28DRAFT_4115at 87.597 kb on - strand, within EX28DRAFT_4115at 87.597 kb on - strand, within EX28DRAFT_4115at 87.597 kb on - strand, within EX28DRAFT_4115at 87.634 kb on - strand, within EX28DRAFT_4115at 87.634 kb on - strand, within EX28DRAFT_4115at 87.634 kb on - strand, within EX28DRAFT_4115at 87.658 kb on + strand, within EX28DRAFT_4115at 87.659 kb on + strand, within EX28DRAFT_4115at 87.660 kb on - strand, within EX28DRAFT_4115at 87.660 kb on - strand, within EX28DRAFT_4115at 87.663 kb on + strand, within EX28DRAFT_4115at 87.663 kb on + strand, within EX28DRAFT_4115at 87.664 kb on - strand, within EX28DRAFT_4115at 87.664 kb on - strand, within EX28DRAFT_4115at 87.697 kb on - strand, within EX28DRAFT_4115at 87.702 kb on + strand, within EX28DRAFT_4115at 87.703 kb on - strand, within EX28DRAFT_4115at 87.703 kb on - strand, within EX28DRAFT_4115at 87.817 kb on - strand, within EX28DRAFT_4115at 87.820 kb on - strand, within EX28DRAFT_4115at 87.861 kb on - strand, within EX28DRAFT_4115at 87.987 kb on + strand, within EX28DRAFT_4115at 88.153 kb on - strandat 88.215 kb on + strandat 88.321 kb on + strandat 88.321 kb on + strandat 88.363 kb on + strandat 88.364 kb on - strandat 88.441 kb on - strandat 88.507 kb on + strandat 88.564 kb on - strand, within EX28DRAFT_4116at 88.654 kb on + strand, within EX28DRAFT_4116at 88.748 kb on + strand, within EX28DRAFT_4116at 88.798 kb on + strand, within EX28DRAFT_4116at 88.799 kb on - strand, within EX28DRAFT_4116at 88.802 kb on + strand, within EX28DRAFT_4116at 88.803 kb on - strand, within EX28DRAFT_4116at 88.803 kb on - strand, within EX28DRAFT_4116at 88.829 kb on + strand, within EX28DRAFT_4116at 88.830 kb on - strand, within EX28DRAFT_4116at 88.868 kb on + strand, within EX28DRAFT_4116at 88.869 kb on - strand, within EX28DRAFT_4116at 88.869 kb on - strand, within EX28DRAFT_4116at 88.869 kb on - strand, within EX28DRAFT_4116at 88.869 kb on - strand, within EX28DRAFT_4116at 88.901 kb on + strand, within EX28DRAFT_4116at 88.995 kb on - strand, within EX28DRAFT_4116at 88.995 kb on - strand, within EX28DRAFT_4116at 88.995 kb on - strand, within EX28DRAFT_4116at 89.004 kb on - strand, within EX28DRAFT_4116at 89.039 kb on + strand, within EX28DRAFT_4116at 89.197 kb on + strand, within EX28DRAFT_4116at 89.197 kb on + strand, within EX28DRAFT_4116at 89.198 kb on - strand, within EX28DRAFT_4116at 89.198 kb on - strand, within EX28DRAFT_4116at 89.201 kb on + strand, within EX28DRAFT_4116at 89.202 kb on - strand, within EX28DRAFT_4116at 89.228 kb on + strand, within EX28DRAFT_4116at 89.295 kb on - strand, within EX28DRAFT_4116at 89.446 kb on + strand, within EX28DRAFT_4116at 89.446 kb on + strand, within EX28DRAFT_4116at 89.446 kb on + strand, within EX28DRAFT_4116at 89.618 kb on - strand, within EX28DRAFT_4116at 89.750 kb on - strand, within EX28DRAFT_4116at 89.755 kb on + strand, within EX28DRAFT_4116at 89.761 kb on + strand, within EX28DRAFT_4116at 89.761 kb on + strand, within EX28DRAFT_4116at 89.762 kb on - strand, within EX28DRAFT_4116at 89.762 kb on - strand, within EX28DRAFT_4116at 89.778 kb on + strand, within EX28DRAFT_4116at 89.779 kb on - strand, within EX28DRAFT_4116at 89.779 kb on - strand, within EX28DRAFT_4116at 89.854 kb on - strand, within EX28DRAFT_4116at 89.915 kb on - strand, within EX28DRAFT_4116at 89.927 kb on + strand, within EX28DRAFT_4116at 89.928 kb on - strand, within EX28DRAFT_4116at 89.928 kb on - strand, within EX28DRAFT_4116at 89.993 kb on - strand, within EX28DRAFT_4116at 90.264 kb on + strandat 90.265 kb on - strandat 90.329 kb on + strandat 90.330 kb on - strandat 90.340 kb on - strandat 90.345 kb on - strandat 90.386 kb on + strandat 90.480 kb on + strand, within EX28DRAFT_4117at 90.567 kb on + strand, within EX28DRAFT_4117at 90.567 kb on + strand, within EX28DRAFT_4117at 90.568 kb on - strand, within EX28DRAFT_4117at 90.737 kb on - strand, within EX28DRAFT_4117at 90.762 kb on + strand, within EX28DRAFT_4117at 90.762 kb on + strand, within EX28DRAFT_4117at 90.763 kb on - strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.766 kb on + strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.767 kb on - strand, within EX28DRAFT_4117at 90.778 kb on + strand, within EX28DRAFT_4117at 90.979 kb on + strand, within EX28DRAFT_4117at 90.979 kb on + strand, within EX28DRAFT_4117at 90.980 kb on - strand, within EX28DRAFT_4117at 90.997 kb on + strand, within EX28DRAFT_4117at 90.997 kb on + strand, within EX28DRAFT_4117at 90.997 kb on + strand, within EX28DRAFT_4117at 90.998 kb on - strand, within EX28DRAFT_4117at 91.004 kb on - strand, within EX28DRAFT_4117at 91.096 kb on + strand, within EX28DRAFT_4117at 91.227 kb on + strand, within EX28DRAFT_4117at 91.227 kb on + strand, within EX28DRAFT_4117at 91.231 kb on + strand, within EX28DRAFT_4117at 91.231 kb on + strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117at 91.232 kb on - strand, within EX28DRAFT_4117

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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87,594 + EX28DRAFT_4115 0.67 -0.3
87,595 - EX28DRAFT_4115 0.67 +0.7
87,597 - EX28DRAFT_4115 0.67 +0.4
87,597 - EX28DRAFT_4115 0.67 +0.2
87,597 - EX28DRAFT_4115 0.67 -0.1
87,634 - EX28DRAFT_4115 0.69 +0.8
87,634 - EX28DRAFT_4115 0.69 +0.7
87,634 - EX28DRAFT_4115 0.69 +0.5
87,658 + EX28DRAFT_4115 0.70 +0.4
87,659 + EX28DRAFT_4115 0.70 +0.4
87,660 - EX28DRAFT_4115 0.70 +0.9
87,660 - EX28DRAFT_4115 0.70 +0.6
87,663 + EX28DRAFT_4115 0.70 -0.1
87,663 + EX28DRAFT_4115 0.70 +0.4
87,664 - EX28DRAFT_4115 0.70 -0.1
87,664 - EX28DRAFT_4115 0.70 +0.7
87,697 - EX28DRAFT_4115 0.71 +0.4
87,702 + EX28DRAFT_4115 0.72 -0.0
87,703 - EX28DRAFT_4115 0.72 +0.8
87,703 - EX28DRAFT_4115 0.72 +1.0
87,817 - EX28DRAFT_4115 0.77 +0.5
87,820 - EX28DRAFT_4115 0.77 +0.7
87,861 - EX28DRAFT_4115 0.79 +0.3
87,987 + EX28DRAFT_4115 0.84 -1.2
88,153 - +0.4
88,215 + +0.1
88,321 + +0.0
88,321 + -0.3
88,363 + -1.1
88,364 - +1.1
88,441 - +1.0
88,507 + +0.4
88,564 - EX28DRAFT_4116 0.11 +0.4
88,654 + EX28DRAFT_4116 0.16 +0.3
88,748 + EX28DRAFT_4116 0.21 +0.0
88,798 + EX28DRAFT_4116 0.23 +0.5
88,799 - EX28DRAFT_4116 0.23 +0.5
88,802 + EX28DRAFT_4116 0.23 +0.2
88,803 - EX28DRAFT_4116 0.23 -1.0
88,803 - EX28DRAFT_4116 0.23 -0.1
88,829 + EX28DRAFT_4116 0.25 -0.6
88,830 - EX28DRAFT_4116 0.25 +0.7
88,868 + EX28DRAFT_4116 0.27 +0.2
88,869 - EX28DRAFT_4116 0.27 +0.3
88,869 - EX28DRAFT_4116 0.27 +0.3
88,869 - EX28DRAFT_4116 0.27 +0.6
88,869 - EX28DRAFT_4116 0.27 +0.6
88,901 + EX28DRAFT_4116 0.28 -0.1
88,995 - EX28DRAFT_4116 0.33 +0.4
88,995 - EX28DRAFT_4116 0.33 +0.6
88,995 - EX28DRAFT_4116 0.33 +0.0
89,004 - EX28DRAFT_4116 0.33 +0.3
89,039 + EX28DRAFT_4116 0.35 -0.4
89,197 + EX28DRAFT_4116 0.43 -1.0
89,197 + EX28DRAFT_4116 0.43 -0.3
89,198 - EX28DRAFT_4116 0.43 +0.6
89,198 - EX28DRAFT_4116 0.43 +0.2
89,201 + EX28DRAFT_4116 0.43 +1.5
89,202 - EX28DRAFT_4116 0.44 +1.1
89,228 + EX28DRAFT_4116 0.45 -0.3
89,295 - EX28DRAFT_4116 0.48 +1.0
89,446 + EX28DRAFT_4116 0.56 -0.3
89,446 + EX28DRAFT_4116 0.56 -0.5
89,446 + EX28DRAFT_4116 0.56 -1.1
89,618 - EX28DRAFT_4116 0.65 +0.9
89,750 - EX28DRAFT_4116 0.71 +1.1
89,755 + EX28DRAFT_4116 0.72 -0.4
89,761 + EX28DRAFT_4116 0.72 -1.3
89,761 + EX28DRAFT_4116 0.72 -0.4
89,762 - EX28DRAFT_4116 0.72 +0.3
89,762 - EX28DRAFT_4116 0.72 +0.8
89,778 + EX28DRAFT_4116 0.73 -0.3
89,779 - EX28DRAFT_4116 0.73 -0.3
89,779 - EX28DRAFT_4116 0.73 -0.5
89,854 - EX28DRAFT_4116 0.77 +1.1
89,915 - EX28DRAFT_4116 0.80 +0.1
89,927 + EX28DRAFT_4116 0.80 -0.4
89,928 - EX28DRAFT_4116 0.80 -1.1
89,928 - EX28DRAFT_4116 0.80 -0.1
89,993 - EX28DRAFT_4116 0.84 +0.7
90,264 + -2.8
90,265 - -0.3
90,329 + +0.6
90,330 - +0.8
90,340 - +0.4
90,345 - -0.5
90,386 + -0.1
90,480 + EX28DRAFT_4117 0.11 +0.9
90,567 + EX28DRAFT_4117 0.18 +0.1
90,567 + EX28DRAFT_4117 0.18 +0.9
90,568 - EX28DRAFT_4117 0.18 +0.1
90,737 - EX28DRAFT_4117 0.31 +0.7
90,762 + EX28DRAFT_4117 0.33 +0.3
90,762 + EX28DRAFT_4117 0.33 +0.6
90,763 - EX28DRAFT_4117 0.33 +1.1
90,766 + EX28DRAFT_4117 0.33 +0.6
90,766 + EX28DRAFT_4117 0.33 +0.7
90,766 + EX28DRAFT_4117 0.33 +0.7
90,766 + EX28DRAFT_4117 0.33 +0.6
90,766 + EX28DRAFT_4117 0.33 +1.1
90,766 + EX28DRAFT_4117 0.33 +1.0
90,767 - EX28DRAFT_4117 0.33 +1.2
90,767 - EX28DRAFT_4117 0.33 +0.2
90,767 - EX28DRAFT_4117 0.33 +0.3
90,767 - EX28DRAFT_4117 0.33 +0.6
90,767 - EX28DRAFT_4117 0.33 +0.7
90,767 - EX28DRAFT_4117 0.33 +0.8
90,778 + EX28DRAFT_4117 0.34 +0.4
90,979 + EX28DRAFT_4117 0.50 +0.3
90,979 + EX28DRAFT_4117 0.50 +0.6
90,980 - EX28DRAFT_4117 0.50 +2.9
90,997 + EX28DRAFT_4117 0.51 +0.4
90,997 + EX28DRAFT_4117 0.51 +0.3
90,997 + EX28DRAFT_4117 0.51 +0.4
90,998 - EX28DRAFT_4117 0.51 +0.2
91,004 - EX28DRAFT_4117 0.52 +0.5
91,096 + EX28DRAFT_4117 0.59 -0.0
91,227 + EX28DRAFT_4117 0.69 +0.2
91,227 + EX28DRAFT_4117 0.69 +0.2
91,231 + EX28DRAFT_4117 0.69 +1.5
91,231 + EX28DRAFT_4117 0.69 +1.4
91,232 - EX28DRAFT_4117 0.69 +0.6
91,232 - EX28DRAFT_4117 0.69 +0.4
91,232 - EX28DRAFT_4117 0.69 +1.9
91,232 - EX28DRAFT_4117 0.69 +0.4

Or see this region's nucleotide sequence