Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4048 and EX28DRAFT_4049 are separated by 159 nucleotides EX28DRAFT_4049 and EX28DRAFT_4050 are separated by 227 nucleotides
EX28DRAFT_4048: EX28DRAFT_4048 - FOG: EAL domain, at 17,752 to 19,758
_4048
EX28DRAFT_4049: EX28DRAFT_4049 - Na+/H+-dicarboxylate symporters, at 19,918 to 21,204
_4049
EX28DRAFT_4050: EX28DRAFT_4050 - Predicted Zn-dependent peptidases, at 21,432 to 22,925
_4050
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1 at 19.125 kb on - strand, within EX28DRAFT_4048 at 19.275 kb on + strand, within EX28DRAFT_4048 at 19.339 kb on - strand, within EX28DRAFT_4048 at 19.339 kb on - strand, within EX28DRAFT_4048 at 19.344 kb on - strand, within EX28DRAFT_4048 at 19.605 kb on + strand at 19.606 kb on - strand at 19.841 kb on + strand at 19.842 kb on - strand at 19.883 kb on - strand at 19.917 kb on + strand at 19.917 kb on + strand at 19.945 kb on + strand at 19.945 kb on + strand at 19.994 kb on - strand at 19.996 kb on + strand at 20.237 kb on + strand, within EX28DRAFT_4049 at 20.238 kb on - strand, within EX28DRAFT_4049 at 20.436 kb on + strand, within EX28DRAFT_4049 at 20.437 kb on - strand, within EX28DRAFT_4049 at 20.442 kb on + strand, within EX28DRAFT_4049 at 20.443 kb on - strand, within EX28DRAFT_4049 at 20.488 kb on - strand, within EX28DRAFT_4049 at 20.535 kb on + strand, within EX28DRAFT_4049 at 20.544 kb on + strand, within EX28DRAFT_4049 at 20.544 kb on + strand, within EX28DRAFT_4049 at 20.544 kb on + strand, within EX28DRAFT_4049 at 20.545 kb on - strand, within EX28DRAFT_4049 at 20.545 kb on - strand, within EX28DRAFT_4049 at 20.548 kb on + strand, within EX28DRAFT_4049 at 20.548 kb on + strand, within EX28DRAFT_4049 at 20.587 kb on - strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.596 kb on + strand, within EX28DRAFT_4049 at 20.597 kb on - strand, within EX28DRAFT_4049 at 20.598 kb on + strand, within EX28DRAFT_4049 at 20.599 kb on - strand, within EX28DRAFT_4049 at 20.680 kb on + strand, within EX28DRAFT_4049 at 20.743 kb on - strand, within EX28DRAFT_4049 at 20.839 kb on + strand, within EX28DRAFT_4049 at 20.839 kb on + strand, within EX28DRAFT_4049 at 20.840 kb on - strand, within EX28DRAFT_4049 at 20.840 kb on - strand, within EX28DRAFT_4049 at 20.840 kb on - strand, within EX28DRAFT_4049 at 20.840 kb on - strand, within EX28DRAFT_4049 at 20.887 kb on - strand, within EX28DRAFT_4049 at 20.938 kb on - strand, within EX28DRAFT_4049 at 20.970 kb on + strand, within EX28DRAFT_4049 at 21.153 kb on + strand at 21.162 kb on + strand at 21.163 kb on - strand at 21.194 kb on + strand at 21.194 kb on + strand at 21.255 kb on + strand at 21.258 kb on + strand at 21.259 kb on - strand at 21.269 kb on - strand at 21.303 kb on + strand at 21.303 kb on + strand at 21.304 kb on - strand at 21.599 kb on + strand, within EX28DRAFT_4050 at 21.602 kb on - strand, within EX28DRAFT_4050 at 21.617 kb on + strand, within EX28DRAFT_4050 at 21.617 kb on + strand, within EX28DRAFT_4050 at 21.618 kb on - strand, within EX28DRAFT_4050 at 21.620 kb on + strand, within EX28DRAFT_4050 at 21.621 kb on - strand, within EX28DRAFT_4050 at 21.621 kb on - strand, within EX28DRAFT_4050 at 21.783 kb on + strand, within EX28DRAFT_4050 at 21.784 kb on - strand, within EX28DRAFT_4050 at 21.789 kb on + strand, within EX28DRAFT_4050 at 21.818 kb on + strand, within EX28DRAFT_4050 at 21.849 kb on - strand, within EX28DRAFT_4050 at 21.852 kb on + strand, within EX28DRAFT_4050 at 21.852 kb on + strand, within EX28DRAFT_4050 at 21.853 kb on - strand, within EX28DRAFT_4050 at 21.903 kb on + strand, within EX28DRAFT_4050 at 21.904 kb on - strand, within EX28DRAFT_4050 at 22.045 kb on + strand, within EX28DRAFT_4050 at 22.045 kb on + strand, within EX28DRAFT_4050 at 22.046 kb on - strand, within EX28DRAFT_4050
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 19,125 - EX28DRAFT_4048 0.68 +1.4 19,275 + EX28DRAFT_4048 0.76 +0.5 19,339 - EX28DRAFT_4048 0.79 +1.0 19,339 - EX28DRAFT_4048 0.79 +0.4 19,344 - EX28DRAFT_4048 0.79 -0.5 19,605 + +0.6 19,606 - -0.2 19,841 + -0.5 19,842 - +0.3 19,883 - -1.0 19,917 + -0.1 19,917 + +0.1 19,945 + +0.4 19,945 + -1.7 19,994 - -0.5 19,996 + -0.3 20,237 + EX28DRAFT_4049 0.25 +0.1 20,238 - EX28DRAFT_4049 0.25 -0.2 20,436 + EX28DRAFT_4049 0.40 +0.7 20,437 - EX28DRAFT_4049 0.40 -0.1 20,442 + EX28DRAFT_4049 0.41 +0.0 20,443 - EX28DRAFT_4049 0.41 -0.4 20,488 - EX28DRAFT_4049 0.44 +0.2 20,535 + EX28DRAFT_4049 0.48 -0.6 20,544 + EX28DRAFT_4049 0.49 -0.3 20,544 + EX28DRAFT_4049 0.49 +0.2 20,544 + EX28DRAFT_4049 0.49 -0.1 20,545 - EX28DRAFT_4049 0.49 -0.6 20,545 - EX28DRAFT_4049 0.49 -0.5 20,548 + EX28DRAFT_4049 0.49 -0.4 20,548 + EX28DRAFT_4049 0.49 -1.9 20,587 - EX28DRAFT_4049 0.52 +0.2 20,596 + EX28DRAFT_4049 0.53 -0.2 20,596 + EX28DRAFT_4049 0.53 -1.1 20,596 + EX28DRAFT_4049 0.53 -0.2 20,596 + EX28DRAFT_4049 0.53 -1.5 20,596 + EX28DRAFT_4049 0.53 -0.0 20,596 + EX28DRAFT_4049 0.53 +0.4 20,597 - EX28DRAFT_4049 0.53 -0.4 20,598 + EX28DRAFT_4049 0.53 +0.3 20,599 - EX28DRAFT_4049 0.53 +0.0 20,680 + EX28DRAFT_4049 0.59 +0.1 20,743 - EX28DRAFT_4049 0.64 +0.3 20,839 + EX28DRAFT_4049 0.72 -0.3 20,839 + EX28DRAFT_4049 0.72 +0.2 20,840 - EX28DRAFT_4049 0.72 +0.2 20,840 - EX28DRAFT_4049 0.72 -2.2 20,840 - EX28DRAFT_4049 0.72 +0.2 20,840 - EX28DRAFT_4049 0.72 -0.9 20,887 - EX28DRAFT_4049 0.75 -0.3 20,938 - EX28DRAFT_4049 0.79 -0.4 20,970 + EX28DRAFT_4049 0.82 -0.1 21,153 + -0.2 21,162 + +0.3 21,163 - -0.3 21,194 + -0.0 21,194 + -0.5 21,255 + +0.5 21,258 + -0.2 21,259 - -0.2 21,269 - +0.3 21,303 + +0.3 21,303 + -0.5 21,304 - +0.2 21,599 + EX28DRAFT_4050 0.11 -0.2 21,602 - EX28DRAFT_4050 0.11 +0.6 21,617 + EX28DRAFT_4050 0.12 +0.6 21,617 + EX28DRAFT_4050 0.12 -0.0 21,618 - EX28DRAFT_4050 0.12 -0.7 21,620 + EX28DRAFT_4050 0.13 -0.1 21,621 - EX28DRAFT_4050 0.13 +0.2 21,621 - EX28DRAFT_4050 0.13 +0.4 21,783 + EX28DRAFT_4050 0.23 -0.1 21,784 - EX28DRAFT_4050 0.24 +1.2 21,789 + EX28DRAFT_4050 0.24 +0.2 21,818 + EX28DRAFT_4050 0.26 -0.1 21,849 - EX28DRAFT_4050 0.28 +0.8 21,852 + EX28DRAFT_4050 0.28 -0.2 21,852 + EX28DRAFT_4050 0.28 +0.3 21,853 - EX28DRAFT_4050 0.28 +0.5 21,903 + EX28DRAFT_4050 0.32 -0.0 21,904 - EX28DRAFT_4050 0.32 -0.2 22,045 + EX28DRAFT_4050 0.41 +0.3 22,045 + EX28DRAFT_4050 0.41 +0.0 22,046 - EX28DRAFT_4050 0.41 -0.1
Or see this region's nucleotide sequence