Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4023

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4022 and EX28DRAFT_4023 are separated by 222 nucleotidesEX28DRAFT_4023 and EX28DRAFT_4024 are separated by 197 nucleotidesEX28DRAFT_4024 and EX28DRAFT_4025 are separated by 7 nucleotides EX28DRAFT_4022: EX28DRAFT_4022 - MoxR-like ATPases, at 232,267 to 233,763 _4022 EX28DRAFT_4023: EX28DRAFT_4023 - potassium uptake protein, at 233,986 to 235,854 _4023 EX28DRAFT_4024: EX28DRAFT_4024 - ABC-type ribose transport system, auxiliary component, at 236,052 to 236,471 _4024 EX28DRAFT_4025: EX28DRAFT_4025 - ABC-type sugar transport system, ATPase component, at 236,479 to 237,984 _4025 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 233.024 kb on + strand, within EX28DRAFT_4022at 233.024 kb on + strand, within EX28DRAFT_4022at 233.024 kb on + strand, within EX28DRAFT_4022at 233.024 kb on + strand, within EX28DRAFT_4022at 233.025 kb on - strand, within EX28DRAFT_4022at 233.025 kb on - strand, within EX28DRAFT_4022at 233.025 kb on - strand, within EX28DRAFT_4022at 233.026 kb on - strand, within EX28DRAFT_4022at 233.066 kb on + strand, within EX28DRAFT_4022at 233.066 kb on + strand, within EX28DRAFT_4022at 233.067 kb on - strand, within EX28DRAFT_4022at 233.067 kb on - strand, within EX28DRAFT_4022at 233.067 kb on - strand, within EX28DRAFT_4022at 233.067 kb on - strand, within EX28DRAFT_4022at 233.129 kb on + strand, within EX28DRAFT_4022at 233.129 kb on + strand, within EX28DRAFT_4022at 233.129 kb on + strand, within EX28DRAFT_4022at 233.261 kb on + strand, within EX28DRAFT_4022at 233.262 kb on - strand, within EX28DRAFT_4022at 233.263 kb on + strand, within EX28DRAFT_4022at 233.453 kb on + strand, within EX28DRAFT_4022at 233.453 kb on + strand, within EX28DRAFT_4022at 233.552 kb on + strand, within EX28DRAFT_4022at 233.665 kb on + strandat 233.766 kb on + strandat 233.766 kb on + strandat 233.766 kb on + strandat 233.766 kb on + strandat 233.766 kb on + strandat 233.811 kb on - strandat 233.834 kb on + strandat 233.870 kb on - strandat 233.875 kb on - strandat 233.889 kb on + strandat 233.920 kb on - strandat 233.920 kb on - strandat 233.920 kb on - strandat 233.920 kb on - strandat 233.981 kb on - strandat 233.985 kb on + strandat 233.986 kb on - strandat 233.997 kb on + strandat 234.000 kb on + strandat 234.000 kb on + strandat 234.000 kb on + strandat 234.001 kb on - strandat 234.021 kb on - strandat 234.075 kb on + strandat 234.187 kb on + strand, within EX28DRAFT_4023at 234.187 kb on + strand, within EX28DRAFT_4023at 234.188 kb on - strand, within EX28DRAFT_4023at 234.188 kb on - strand, within EX28DRAFT_4023at 234.262 kb on - strand, within EX28DRAFT_4023at 234.265 kb on - strand, within EX28DRAFT_4023at 234.488 kb on + strand, within EX28DRAFT_4023at 234.489 kb on - strand, within EX28DRAFT_4023at 234.679 kb on + strand, within EX28DRAFT_4023at 234.680 kb on - strand, within EX28DRAFT_4023at 234.729 kb on + strand, within EX28DRAFT_4023at 234.786 kb on + strand, within EX28DRAFT_4023at 234.786 kb on + strand, within EX28DRAFT_4023at 234.969 kb on + strand, within EX28DRAFT_4023at 234.998 kb on - strand, within EX28DRAFT_4023at 234.998 kb on - strand, within EX28DRAFT_4023at 234.998 kb on - strand, within EX28DRAFT_4023at 234.998 kb on - strand, within EX28DRAFT_4023at 235.024 kb on + strand, within EX28DRAFT_4023at 235.203 kb on + strand, within EX28DRAFT_4023at 235.418 kb on + strand, within EX28DRAFT_4023at 235.418 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.420 kb on + strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.421 kb on - strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.422 kb on + strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.423 kb on - strand, within EX28DRAFT_4023at 235.534 kb on + strand, within EX28DRAFT_4023at 235.535 kb on - strand, within EX28DRAFT_4023at 235.696 kb on - strandat 235.736 kb on - strandat 235.759 kb on + strandat 235.759 kb on + strandat 235.759 kb on + strandat 235.852 kb on + strandat 235.853 kb on - strandat 235.921 kb on + strandat 235.922 kb on - strandat 236.213 kb on - strand, within EX28DRAFT_4024at 236.279 kb on + strand, within EX28DRAFT_4024at 236.279 kb on + strand, within EX28DRAFT_4024at 236.280 kb on - strand, within EX28DRAFT_4024at 236.312 kb on + strand, within EX28DRAFT_4024at 236.347 kb on + strand, within EX28DRAFT_4024at 236.347 kb on + strand, within EX28DRAFT_4024at 236.348 kb on - strand, within EX28DRAFT_4024at 236.441 kb on + strandat 236.511 kb on + strandat 236.512 kb on - strandat 236.638 kb on + strand, within EX28DRAFT_4025at 236.639 kb on - strand, within EX28DRAFT_4025at 236.728 kb on - strand, within EX28DRAFT_4025at 236.833 kb on + strand, within EX28DRAFT_4025at 236.833 kb on + strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025at 236.834 kb on - strand, within EX28DRAFT_4025

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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233,024 + EX28DRAFT_4022 0.51 +0.5
233,024 + EX28DRAFT_4022 0.51 -0.7
233,024 + EX28DRAFT_4022 0.51 +0.3
233,024 + EX28DRAFT_4022 0.51 -0.4
233,025 - EX28DRAFT_4022 0.51 +1.6
233,025 - EX28DRAFT_4022 0.51 +0.2
233,025 - EX28DRAFT_4022 0.51 +0.6
233,026 - EX28DRAFT_4022 0.51 +0.5
233,066 + EX28DRAFT_4022 0.53 +1.1
233,066 + EX28DRAFT_4022 0.53 -2.8
233,067 - EX28DRAFT_4022 0.53 -0.2
233,067 - EX28DRAFT_4022 0.53 +0.6
233,067 - EX28DRAFT_4022 0.53 +0.1
233,067 - EX28DRAFT_4022 0.53 +0.3
233,129 + EX28DRAFT_4022 0.58 -0.3
233,129 + EX28DRAFT_4022 0.58 +0.2
233,129 + EX28DRAFT_4022 0.58 +0.1
233,261 + EX28DRAFT_4022 0.66 +0.7
233,262 - EX28DRAFT_4022 0.66 +0.1
233,263 + EX28DRAFT_4022 0.67 -0.2
233,453 + EX28DRAFT_4022 0.79 +0.4
233,453 + EX28DRAFT_4022 0.79 +0.6
233,552 + EX28DRAFT_4022 0.86 +0.4
233,665 + -0.2
233,766 + +0.3
233,766 + +0.3
233,766 + +0.5
233,766 + +0.5
233,766 + -0.0
233,811 - +0.9
233,834 + +0.2
233,870 - +0.7
233,875 - +1.0
233,889 + +0.1
233,920 - +0.4
233,920 - +0.8
233,920 - +0.1
233,920 - +0.6
233,981 - +0.1
233,985 + +0.1
233,986 - +1.8
233,997 + +1.2
234,000 + -1.1
234,000 + +0.0
234,000 + -0.9
234,001 - -0.3
234,021 - +0.3
234,075 + +0.2
234,187 + EX28DRAFT_4023 0.11 -0.3
234,187 + EX28DRAFT_4023 0.11 +0.3
234,188 - EX28DRAFT_4023 0.11 +0.3
234,188 - EX28DRAFT_4023 0.11 +0.1
234,262 - EX28DRAFT_4023 0.15 -0.1
234,265 - EX28DRAFT_4023 0.15 -0.8
234,488 + EX28DRAFT_4023 0.27 -1.1
234,489 - EX28DRAFT_4023 0.27 -0.7
234,679 + EX28DRAFT_4023 0.37 -0.4
234,680 - EX28DRAFT_4023 0.37 -0.0
234,729 + EX28DRAFT_4023 0.40 -0.4
234,786 + EX28DRAFT_4023 0.43 -1.5
234,786 + EX28DRAFT_4023 0.43 -0.1
234,969 + EX28DRAFT_4023 0.53 -0.1
234,998 - EX28DRAFT_4023 0.54 -0.6
234,998 - EX28DRAFT_4023 0.54 -0.7
234,998 - EX28DRAFT_4023 0.54 -0.2
234,998 - EX28DRAFT_4023 0.54 -0.3
235,024 + EX28DRAFT_4023 0.56 -0.0
235,203 + EX28DRAFT_4023 0.65 -0.1
235,418 + EX28DRAFT_4023 0.77 -0.4
235,418 + EX28DRAFT_4023 0.77 -0.8
235,420 + EX28DRAFT_4023 0.77 -0.6
235,420 + EX28DRAFT_4023 0.77 -1.7
235,420 + EX28DRAFT_4023 0.77 -0.6
235,420 + EX28DRAFT_4023 0.77 -0.5
235,420 + EX28DRAFT_4023 0.77 -1.9
235,420 + EX28DRAFT_4023 0.77 -0.1
235,421 - EX28DRAFT_4023 0.77 -0.7
235,421 - EX28DRAFT_4023 0.77 -0.8
235,421 - EX28DRAFT_4023 0.77 -0.4
235,421 - EX28DRAFT_4023 0.77 -0.3
235,421 - EX28DRAFT_4023 0.77 +1.0
235,421 - EX28DRAFT_4023 0.77 -1.8
235,422 + EX28DRAFT_4023 0.77 -0.1
235,422 + EX28DRAFT_4023 0.77 -0.7
235,422 + EX28DRAFT_4023 0.77 -0.1
235,422 + EX28DRAFT_4023 0.77 -0.6
235,422 + EX28DRAFT_4023 0.77 +1.2
235,422 + EX28DRAFT_4023 0.77 -0.1
235,422 + EX28DRAFT_4023 0.77 -1.2
235,422 + EX28DRAFT_4023 0.77 +0.3
235,423 - EX28DRAFT_4023 0.77 -0.5
235,423 - EX28DRAFT_4023 0.77 -0.1
235,423 - EX28DRAFT_4023 0.77 +0.4
235,423 - EX28DRAFT_4023 0.77 +0.2
235,423 - EX28DRAFT_4023 0.77 +0.2
235,423 - EX28DRAFT_4023 0.77 -1.6
235,423 - EX28DRAFT_4023 0.77 +0.4
235,423 - EX28DRAFT_4023 0.77 -0.1
235,423 - EX28DRAFT_4023 0.77 -0.0
235,423 - EX28DRAFT_4023 0.77 +0.5
235,423 - EX28DRAFT_4023 0.77 -0.5
235,423 - EX28DRAFT_4023 0.77 -0.4
235,423 - EX28DRAFT_4023 0.77 -1.8
235,534 + EX28DRAFT_4023 0.83 -1.2
235,535 - EX28DRAFT_4023 0.83 -1.4
235,696 - +0.2
235,736 - -0.5
235,759 + +0.2
235,759 + +0.6
235,759 + +0.0
235,852 + -0.1
235,853 - +0.4
235,921 + -0.4
235,922 - +2.2
236,213 - EX28DRAFT_4024 0.38 +1.0
236,279 + EX28DRAFT_4024 0.54 -0.1
236,279 + EX28DRAFT_4024 0.54 -0.1
236,280 - EX28DRAFT_4024 0.54 -0.2
236,312 + EX28DRAFT_4024 0.62 -0.9
236,347 + EX28DRAFT_4024 0.70 -0.0
236,347 + EX28DRAFT_4024 0.70 -0.1
236,348 - EX28DRAFT_4024 0.70 -0.1
236,441 + -0.2
236,511 + -0.9
236,512 - +2.0
236,638 + EX28DRAFT_4025 0.11 -1.4
236,639 - EX28DRAFT_4025 0.11 +0.7
236,728 - EX28DRAFT_4025 0.17 +0.4
236,833 + EX28DRAFT_4025 0.24 -1.0
236,833 + EX28DRAFT_4025 0.24 +0.8
236,834 - EX28DRAFT_4025 0.24 +0.4
236,834 - EX28DRAFT_4025 0.24 -0.3
236,834 - EX28DRAFT_4025 0.24 -0.6

Or see this region's nucleotide sequence