Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3945 and EX28DRAFT_3946 are separated by 233 nucleotides EX28DRAFT_3946 and EX28DRAFT_3947 are separated by 56 nucleotides EX28DRAFT_3947 and EX28DRAFT_3948 are separated by 290 nucleotides
EX28DRAFT_3945: EX28DRAFT_3945 - Protein of unknown function (DUF1198), at 155,520 to 155,972
_3945
EX28DRAFT_3946: EX28DRAFT_3946 - hypothetical protein, at 156,206 to 156,661
_3946
EX28DRAFT_3947: EX28DRAFT_3947 - RNA, at 156,718 to 156,806
_3947
EX28DRAFT_3948: EX28DRAFT_3948 - KAP family P-loop domain, at 157,097 to 158,623
_3948
Position (kb) 156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.039 kb on + strand at 156.040 kb on - strand at 156.042 kb on + strand at 156.043 kb on - strand at 156.110 kb on - strand at 156.110 kb on - strand at 156.169 kb on + strand at 156.187 kb on - strand at 156.222 kb on + strand at 156.223 kb on - strand at 156.238 kb on - strand at 156.266 kb on + strand, within EX28DRAFT_3946 at 156.267 kb on - strand, within EX28DRAFT_3946 at 156.290 kb on + strand, within EX28DRAFT_3946 at 156.310 kb on + strand, within EX28DRAFT_3946 at 156.315 kb on - strand, within EX28DRAFT_3946 at 156.315 kb on - strand, within EX28DRAFT_3946 at 156.336 kb on - strand, within EX28DRAFT_3946 at 156.423 kb on - strand, within EX28DRAFT_3946 at 156.476 kb on + strand, within EX28DRAFT_3946 at 156.476 kb on + strand, within EX28DRAFT_3946 at 156.491 kb on + strand, within EX28DRAFT_3946 at 156.499 kb on + strand, within EX28DRAFT_3946 at 156.499 kb on + strand, within EX28DRAFT_3946 at 156.500 kb on - strand, within EX28DRAFT_3946 at 156.500 kb on - strand, within EX28DRAFT_3946 at 156.500 kb on - strand, within EX28DRAFT_3946 at 156.602 kb on + strand, within EX28DRAFT_3946 at 156.602 kb on + strand, within EX28DRAFT_3946 at 156.603 kb on - strand, within EX28DRAFT_3946 at 156.603 kb on - strand, within EX28DRAFT_3946 at 156.614 kb on - strand, within EX28DRAFT_3946 at 156.640 kb on + strand at 156.652 kb on + strand at 156.684 kb on + strand at 156.689 kb on + strand at 156.689 kb on + strand at 156.690 kb on - strand at 156.741 kb on + strand, within EX28DRAFT_3947 at 156.856 kb on + strand at 156.926 kb on + strand at 156.940 kb on + strand at 157.036 kb on + strand at 157.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 156,039 + -0.2 156,040 - -0.2 156,042 + -0.1 156,043 - +0.1 156,110 - +1.2 156,110 - -0.7 156,169 + +0.8 156,187 - -0.3 156,222 + +0.5 156,223 - +0.1 156,238 - +0.2 156,266 + EX28DRAFT_3946 0.13 -0.6 156,267 - EX28DRAFT_3946 0.13 +0.2 156,290 + EX28DRAFT_3946 0.18 +0.4 156,310 + EX28DRAFT_3946 0.23 +0.3 156,315 - EX28DRAFT_3946 0.24 +0.5 156,315 - EX28DRAFT_3946 0.24 +0.3 156,336 - EX28DRAFT_3946 0.29 -1.0 156,423 - EX28DRAFT_3946 0.48 +0.3 156,476 + EX28DRAFT_3946 0.59 -0.2 156,476 + EX28DRAFT_3946 0.59 +2.2 156,491 + EX28DRAFT_3946 0.62 -2.9 156,499 + EX28DRAFT_3946 0.64 +0.0 156,499 + EX28DRAFT_3946 0.64 -0.0 156,500 - EX28DRAFT_3946 0.64 -0.3 156,500 - EX28DRAFT_3946 0.64 -0.0 156,500 - EX28DRAFT_3946 0.64 -0.4 156,602 + EX28DRAFT_3946 0.87 +0.4 156,602 + EX28DRAFT_3946 0.87 -2.0 156,603 - EX28DRAFT_3946 0.87 +0.3 156,603 - EX28DRAFT_3946 0.87 +0.2 156,614 - EX28DRAFT_3946 0.89 +0.8 156,640 + +0.0 156,652 + -0.6 156,684 + -0.1 156,689 + +0.0 156,689 + -0.0 156,690 - +1.8 156,741 + EX28DRAFT_3947 0.26 -0.2 156,856 + +0.3 156,926 + -0.3 156,940 + +0.0 157,036 + -0.5 157,066 - -0.3
Or see this region's nucleotide sequence