Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3926 and EX28DRAFT_3927 are separated by 21 nucleotides EX28DRAFT_3927 and EX28DRAFT_3928 are separated by 112 nucleotides EX28DRAFT_3928 and EX28DRAFT_3929 are separated by 26 nucleotides EX28DRAFT_3929 and EX28DRAFT_3930 are separated by 122 nucleotides
EX28DRAFT_3926: EX28DRAFT_3926 - Predicted ATPase, at 135,328 to 136,416
_3926
EX28DRAFT_3927: EX28DRAFT_3927 - hypothetical protein, at 136,438 to 136,686
_3927
EX28DRAFT_3928: EX28DRAFT_3928 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 136,799 to 137,752
_3928
EX28DRAFT_3929: EX28DRAFT_3929 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 137,779 to 138,558
_3929
EX28DRAFT_3930: EX28DRAFT_3930 - lipoprotein, YaeC family, at 138,681 to 139,481
_3930
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1 at 135.806 kb on + strand, within EX28DRAFT_3926 at 135.871 kb on - strand, within EX28DRAFT_3926 at 135.883 kb on + strand, within EX28DRAFT_3926 at 136.366 kb on + strand at 136.415 kb on - strand at 136.489 kb on + strand, within EX28DRAFT_3927 at 136.490 kb on - strand, within EX28DRAFT_3927 at 136.490 kb on - strand, within EX28DRAFT_3927 at 136.490 kb on - strand, within EX28DRAFT_3927 at 136.530 kb on + strand, within EX28DRAFT_3927 at 136.531 kb on - strand, within EX28DRAFT_3927 at 136.655 kb on - strand, within EX28DRAFT_3927 at 136.663 kb on + strand at 136.664 kb on - strand at 136.677 kb on + strand at 136.677 kb on + strand at 136.677 kb on + strand at 136.678 kb on - strand at 136.678 kb on - strand at 136.680 kb on + strand at 136.681 kb on - strand at 136.687 kb on + strand at 136.736 kb on + strand at 136.740 kb on + strand at 136.740 kb on + strand at 136.740 kb on + strand at 136.741 kb on - strand at 136.745 kb on + strand at 136.745 kb on + strand at 136.746 kb on - strand at 136.785 kb on - strand at 136.800 kb on + strand at 136.801 kb on - strand at 136.801 kb on - strand at 137.006 kb on - strand, within EX28DRAFT_3928 at 137.068 kb on + strand, within EX28DRAFT_3928 at 137.069 kb on - strand, within EX28DRAFT_3928 at 137.097 kb on + strand, within EX28DRAFT_3928 at 137.113 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.137 kb on + strand, within EX28DRAFT_3928 at 137.249 kb on - strand, within EX28DRAFT_3928 at 137.249 kb on - strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.250 kb on + strand, within EX28DRAFT_3928 at 137.251 kb on - strand, within EX28DRAFT_3928 at 137.296 kb on + strand, within EX28DRAFT_3928 at 137.297 kb on - strand, within EX28DRAFT_3928 at 137.314 kb on - strand, within EX28DRAFT_3928 at 137.314 kb on - strand, within EX28DRAFT_3928 at 137.323 kb on + strand, within EX28DRAFT_3928 at 137.415 kb on + strand, within EX28DRAFT_3928 at 137.697 kb on + strand at 137.785 kb on + strand at 137.787 kb on + strand at 137.788 kb on - strand at 137.847 kb on - strand at 137.847 kb on - strand at 137.962 kb on - strand, within EX28DRAFT_3929 at 138.081 kb on - strand, within EX28DRAFT_3929 at 138.440 kb on + strand, within EX28DRAFT_3929 at 138.496 kb on + strand at 138.497 kb on - strand at 138.497 kb on - strand at 138.519 kb on + strand at 138.520 kb on - strand at 138.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 135,806 + EX28DRAFT_3926 0.44 +1.1 135,871 - EX28DRAFT_3926 0.50 +0.0 135,883 + EX28DRAFT_3926 0.51 +0.7 136,366 + -0.3 136,415 - -0.4 136,489 + EX28DRAFT_3927 0.20 +0.4 136,490 - EX28DRAFT_3927 0.21 -1.5 136,490 - EX28DRAFT_3927 0.21 -0.1 136,490 - EX28DRAFT_3927 0.21 +0.1 136,530 + EX28DRAFT_3927 0.37 -1.2 136,531 - EX28DRAFT_3927 0.37 -0.2 136,655 - EX28DRAFT_3927 0.87 +0.1 136,663 + +0.3 136,664 - +0.5 136,677 + -0.3 136,677 + +0.9 136,677 + +0.7 136,678 - -0.3 136,678 - +0.0 136,680 + +0.1 136,681 - +0.2 136,687 + +0.4 136,736 + -0.2 136,740 + +0.2 136,740 + +0.3 136,740 + -0.1 136,741 - +0.8 136,745 + +0.8 136,745 + +0.2 136,746 - +0.1 136,785 - -0.1 136,800 + -0.0 136,801 - +0.1 136,801 - +0.1 137,006 - EX28DRAFT_3928 0.22 +0.3 137,068 + EX28DRAFT_3928 0.28 +0.3 137,069 - EX28DRAFT_3928 0.28 -1.0 137,097 + EX28DRAFT_3928 0.31 +0.1 137,113 + EX28DRAFT_3928 0.33 +0.4 137,137 + EX28DRAFT_3928 0.35 +0.0 137,137 + EX28DRAFT_3928 0.35 +0.1 137,137 + EX28DRAFT_3928 0.35 -0.9 137,137 + EX28DRAFT_3928 0.35 -0.0 137,249 - EX28DRAFT_3928 0.47 +0.3 137,249 - EX28DRAFT_3928 0.47 +0.1 137,250 + EX28DRAFT_3928 0.47 -0.1 137,250 + EX28DRAFT_3928 0.47 -1.3 137,250 + EX28DRAFT_3928 0.47 +0.1 137,250 + EX28DRAFT_3928 0.47 +0.3 137,251 - EX28DRAFT_3928 0.47 +0.8 137,296 + EX28DRAFT_3928 0.52 +0.7 137,297 - EX28DRAFT_3928 0.52 +0.4 137,314 - EX28DRAFT_3928 0.54 -1.4 137,314 - EX28DRAFT_3928 0.54 -0.3 137,323 + EX28DRAFT_3928 0.55 +0.2 137,415 + EX28DRAFT_3928 0.65 +0.8 137,697 + +0.4 137,785 + +0.1 137,787 + -0.6 137,788 - +0.5 137,847 - +0.4 137,847 - -0.4 137,962 - EX28DRAFT_3929 0.23 -0.5 138,081 - EX28DRAFT_3929 0.39 -0.2 138,440 + EX28DRAFT_3929 0.85 -0.0 138,496 + +1.5 138,497 - -1.3 138,497 - -0.6 138,519 + -0.1 138,520 - -1.1 138,558 + -2.0
Or see this region's nucleotide sequence