Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3800 and EX28DRAFT_3801 overlap by 4 nucleotides EX28DRAFT_3801 and EX28DRAFT_3802 are separated by 10 nucleotides EX28DRAFT_3802 and EX28DRAFT_3803 are separated by 9 nucleotides
EX28DRAFT_3800: EX28DRAFT_3800 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 2,676 to 3,689
_3800
EX28DRAFT_3801: EX28DRAFT_3801 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 3,686 to 4,669
_3801
EX28DRAFT_3802: EX28DRAFT_3802 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 4,680 to 5,582
_3802
EX28DRAFT_3803: EX28DRAFT_3803 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 5,592 to 6,611
_3803
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3.683 kb on + strand at 3.689 kb on + strand at 3.690 kb on - strand at 3.837 kb on + strand, within EX28DRAFT_3801 at 3.837 kb on + strand, within EX28DRAFT_3801 at 3.838 kb on - strand, within EX28DRAFT_3801 at 3.838 kb on - strand, within EX28DRAFT_3801 at 3.838 kb on - strand, within EX28DRAFT_3801 at 4.058 kb on - strand, within EX28DRAFT_3801 at 4.301 kb on - strand, within EX28DRAFT_3801 at 4.353 kb on + strand, within EX28DRAFT_3801 at 4.459 kb on + strand, within EX28DRAFT_3801 at 4.580 kb on + strand at 4.580 kb on + strand at 4.581 kb on - strand at 4.659 kb on - strand at 4.681 kb on + strand at 4.733 kb on + strand at 4.734 kb on - strand at 4.734 kb on - strand at 4.943 kb on + strand, within EX28DRAFT_3802 at 4.943 kb on + strand, within EX28DRAFT_3802 at 4.943 kb on + strand, within EX28DRAFT_3802 at 4.952 kb on + strand, within EX28DRAFT_3802 at 5.056 kb on + strand, within EX28DRAFT_3802 at 5.056 kb on + strand, within EX28DRAFT_3802 at 5.057 kb on - strand, within EX28DRAFT_3802 at 5.229 kb on + strand, within EX28DRAFT_3802 at 5.230 kb on - strand, within EX28DRAFT_3802 at 5.297 kb on - strand, within EX28DRAFT_3802 at 5.419 kb on + strand, within EX28DRAFT_3802 at 5.420 kb on - strand, within EX28DRAFT_3802 at 5.463 kb on + strand, within EX28DRAFT_3802 at 5.464 kb on - strand, within EX28DRAFT_3802 at 5.464 kb on - strand, within EX28DRAFT_3802 at 5.470 kb on + strand, within EX28DRAFT_3802 at 5.471 kb on - strand, within EX28DRAFT_3802 at 5.562 kb on - strand at 5.562 kb on - strand at 5.593 kb on + strand at 5.594 kb on - strand at 5.600 kb on + strand at 5.600 kb on + strand at 5.601 kb on - strand at 5.630 kb on - strand at 5.683 kb on - strand at 5.683 kb on - strand at 5.683 kb on - strand at 5.840 kb on + strand, within EX28DRAFT_3803 at 5.903 kb on + strand, within EX28DRAFT_3803 at 5.905 kb on + strand, within EX28DRAFT_3803 at 6.041 kb on + strand, within EX28DRAFT_3803 at 6.060 kb on - strand, within EX28DRAFT_3803 at 6.098 kb on + strand, within EX28DRAFT_3803 at 6.098 kb on + strand, within EX28DRAFT_3803 at 6.179 kb on + strand, within EX28DRAFT_3803 at 6.378 kb on + strand, within EX28DRAFT_3803 at 6.404 kb on + strand, within EX28DRAFT_3803 at 6.404 kb on + strand, within EX28DRAFT_3803 at 6.404 kb on + strand, within EX28DRAFT_3803 at 6.404 kb on + strand, within EX28DRAFT_3803 at 6.405 kb on - strand, within EX28DRAFT_3803 at 6.405 kb on - strand, within EX28DRAFT_3803 at 6.406 kb on + strand, within EX28DRAFT_3803 at 6.406 kb on + strand, within EX28DRAFT_3803 at 6.407 kb on - strand, within EX28DRAFT_3803 at 6.407 kb on - strand, within EX28DRAFT_3803 at 6.482 kb on + strand, within EX28DRAFT_3803 at 6.500 kb on + strand, within EX28DRAFT_3803 at 6.501 kb on - strand, within EX28DRAFT_3803 at 6.527 kb on + strand at 6.528 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 3,683 + +0.0 3,689 + +0.0 3,690 - +0.4 3,837 + EX28DRAFT_3801 0.15 +1.1 3,837 + EX28DRAFT_3801 0.15 -0.2 3,838 - EX28DRAFT_3801 0.15 -0.3 3,838 - EX28DRAFT_3801 0.15 +0.0 3,838 - EX28DRAFT_3801 0.15 +0.3 4,058 - EX28DRAFT_3801 0.38 -0.8 4,301 - EX28DRAFT_3801 0.62 -0.2 4,353 + EX28DRAFT_3801 0.68 -0.6 4,459 + EX28DRAFT_3801 0.79 +0.1 4,580 + -0.0 4,580 + +0.2 4,581 - -0.1 4,659 - +0.4 4,681 + +0.3 4,733 + -0.3 4,734 - +0.2 4,734 - +0.3 4,943 + EX28DRAFT_3802 0.29 -0.1 4,943 + EX28DRAFT_3802 0.29 +0.4 4,943 + EX28DRAFT_3802 0.29 +0.3 4,952 + EX28DRAFT_3802 0.30 +0.6 5,056 + EX28DRAFT_3802 0.42 -1.3 5,056 + EX28DRAFT_3802 0.42 -0.3 5,057 - EX28DRAFT_3802 0.42 -0.6 5,229 + EX28DRAFT_3802 0.61 -2.2 5,230 - EX28DRAFT_3802 0.61 -0.2 5,297 - EX28DRAFT_3802 0.68 +0.2 5,419 + EX28DRAFT_3802 0.82 -0.3 5,420 - EX28DRAFT_3802 0.82 +0.6 5,463 + EX28DRAFT_3802 0.87 -0.9 5,464 - EX28DRAFT_3802 0.87 -3.0 5,464 - EX28DRAFT_3802 0.87 -0.3 5,470 + EX28DRAFT_3802 0.87 -0.4 5,471 - EX28DRAFT_3802 0.88 -0.9 5,562 - +0.2 5,562 - -1.3 5,593 + +0.1 5,594 - -0.2 5,600 + -0.0 5,600 + +1.1 5,601 - +0.1 5,630 - +0.1 5,683 - +0.1 5,683 - -0.9 5,683 - +0.8 5,840 + EX28DRAFT_3803 0.24 +0.3 5,903 + EX28DRAFT_3803 0.30 -0.2 5,905 + EX28DRAFT_3803 0.31 +0.2 6,041 + EX28DRAFT_3803 0.44 -0.2 6,060 - EX28DRAFT_3803 0.46 +0.0 6,098 + EX28DRAFT_3803 0.50 +0.2 6,098 + EX28DRAFT_3803 0.50 -0.6 6,179 + EX28DRAFT_3803 0.58 +0.4 6,378 + EX28DRAFT_3803 0.77 +0.3 6,404 + EX28DRAFT_3803 0.80 -1.2 6,404 + EX28DRAFT_3803 0.80 +0.8 6,404 + EX28DRAFT_3803 0.80 -0.4 6,404 + EX28DRAFT_3803 0.80 +0.3 6,405 - EX28DRAFT_3803 0.80 -0.0 6,405 - EX28DRAFT_3803 0.80 +0.3 6,406 + EX28DRAFT_3803 0.80 -1.0 6,406 + EX28DRAFT_3803 0.80 -0.2 6,407 - EX28DRAFT_3803 0.80 +0.4 6,407 - EX28DRAFT_3803 0.80 -0.6 6,482 + EX28DRAFT_3803 0.87 -0.3 6,500 + EX28DRAFT_3803 0.89 -0.5 6,501 - EX28DRAFT_3803 0.89 +0.2 6,527 + -0.1 6,528 - +0.4
Or see this region's nucleotide sequence