Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3747 and EX28DRAFT_3748 overlap by 8 nucleotides EX28DRAFT_3748 and EX28DRAFT_3749 are separated by 82 nucleotides EX28DRAFT_3749 and EX28DRAFT_3750 are separated by 131 nucleotides
EX28DRAFT_3747: EX28DRAFT_3747 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 426,338 to 427,138
_3747
EX28DRAFT_3748: EX28DRAFT_3748 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 427,131 to 427,829
_3748
EX28DRAFT_3749: EX28DRAFT_3749 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 427,912 to 429,426
_3749
EX28DRAFT_3750: EX28DRAFT_3750 - periplasmic serine protease, Do/DeqQ family, at 429,558 to 430,994
_3750
Position (kb) 427
428
429
430 Strain fitness (log2 ratio) -1
0
1
2 at 426.994 kb on + strand, within EX28DRAFT_3747 at 426.995 kb on - strand, within EX28DRAFT_3747 at 427.039 kb on + strand, within EX28DRAFT_3747 at 427.040 kb on - strand, within EX28DRAFT_3747 at 427.057 kb on + strand, within EX28DRAFT_3747 at 427.078 kb on - strand at 427.078 kb on - strand at 427.126 kb on + strand at 427.127 kb on - strand at 427.133 kb on - strand at 427.855 kb on - strand at 427.864 kb on - strand at 427.868 kb on + strand at 428.002 kb on - strand at 428.146 kb on + strand, within EX28DRAFT_3749 at 428.146 kb on + strand, within EX28DRAFT_3749 at 428.148 kb on + strand, within EX28DRAFT_3749 at 428.200 kb on + strand, within EX28DRAFT_3749 at 428.201 kb on - strand, within EX28DRAFT_3749 at 428.201 kb on - strand, within EX28DRAFT_3749 at 428.332 kb on + strand, within EX28DRAFT_3749 at 428.348 kb on + strand, within EX28DRAFT_3749 at 428.545 kb on + strand, within EX28DRAFT_3749 at 428.594 kb on - strand, within EX28DRAFT_3749 at 428.594 kb on - strand, within EX28DRAFT_3749 at 428.617 kb on + strand, within EX28DRAFT_3749 at 428.618 kb on - strand, within EX28DRAFT_3749 at 428.637 kb on + strand, within EX28DRAFT_3749 at 428.701 kb on - strand, within EX28DRAFT_3749 at 428.718 kb on + strand, within EX28DRAFT_3749 at 428.719 kb on - strand, within EX28DRAFT_3749 at 428.883 kb on - strand, within EX28DRAFT_3749 at 428.893 kb on - strand, within EX28DRAFT_3749 at 428.893 kb on - strand, within EX28DRAFT_3749 at 428.910 kb on + strand, within EX28DRAFT_3749 at 428.911 kb on - strand, within EX28DRAFT_3749 at 428.911 kb on - strand, within EX28DRAFT_3749 at 428.911 kb on - strand, within EX28DRAFT_3749 at 428.914 kb on + strand, within EX28DRAFT_3749 at 428.915 kb on - strand, within EX28DRAFT_3749 at 428.915 kb on - strand, within EX28DRAFT_3749 at 428.928 kb on + strand, within EX28DRAFT_3749 at 428.928 kb on + strand, within EX28DRAFT_3749 at 428.928 kb on + strand, within EX28DRAFT_3749 at 428.933 kb on + strand, within EX28DRAFT_3749 at 428.938 kb on - strand, within EX28DRAFT_3749 at 429.057 kb on + strand, within EX28DRAFT_3749 at 429.081 kb on - strand, within EX28DRAFT_3749 at 429.081 kb on - strand, within EX28DRAFT_3749 at 429.222 kb on - strand, within EX28DRAFT_3749 at 429.274 kb on + strand, within EX28DRAFT_3749 at 429.275 kb on - strand at 429.275 kb on - strand at 429.331 kb on + strand at 429.331 kb on + strand at 429.331 kb on + strand at 429.332 kb on - strand at 429.334 kb on + strand at 429.335 kb on - strand at 429.335 kb on - strand at 429.351 kb on + strand at 429.361 kb on + strand at 429.361 kb on + strand at 429.362 kb on - strand at 429.364 kb on - strand at 429.385 kb on + strand at 429.424 kb on + strand at 429.491 kb on - strand at 429.722 kb on + strand, within EX28DRAFT_3750 at 429.722 kb on + strand, within EX28DRAFT_3750 at 429.722 kb on + strand, within EX28DRAFT_3750 at 429.723 kb on - strand, within EX28DRAFT_3750 at 429.752 kb on + strand, within EX28DRAFT_3750 at 429.753 kb on - strand, within EX28DRAFT_3750 at 429.923 kb on + strand, within EX28DRAFT_3750 at 429.924 kb on - strand, within EX28DRAFT_3750 at 429.924 kb on - strand, within EX28DRAFT_3750 at 429.942 kb on + strand, within EX28DRAFT_3750 at 429.942 kb on + strand, within EX28DRAFT_3750 at 429.943 kb on - strand, within EX28DRAFT_3750 at 430.134 kb on + strand, within EX28DRAFT_3750 at 430.380 kb on - strand, within EX28DRAFT_3750
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 426,994 + EX28DRAFT_3747 0.82 -0.3 426,995 - EX28DRAFT_3747 0.82 +0.4 427,039 + EX28DRAFT_3747 0.88 -0.5 427,040 - EX28DRAFT_3747 0.88 +0.3 427,057 + EX28DRAFT_3747 0.90 +0.4 427,078 - +0.2 427,078 - +0.2 427,126 + +0.7 427,127 - +0.8 427,133 - -0.4 427,855 - -0.0 427,864 - -0.3 427,868 + +0.5 428,002 - -0.6 428,146 + EX28DRAFT_3749 0.15 -0.2 428,146 + EX28DRAFT_3749 0.15 +0.8 428,148 + EX28DRAFT_3749 0.16 -0.2 428,200 + EX28DRAFT_3749 0.19 +1.2 428,201 - EX28DRAFT_3749 0.19 +0.5 428,201 - EX28DRAFT_3749 0.19 +0.1 428,332 + EX28DRAFT_3749 0.28 +0.2 428,348 + EX28DRAFT_3749 0.29 +0.2 428,545 + EX28DRAFT_3749 0.42 +0.5 428,594 - EX28DRAFT_3749 0.45 +0.6 428,594 - EX28DRAFT_3749 0.45 +1.1 428,617 + EX28DRAFT_3749 0.47 +0.7 428,618 - EX28DRAFT_3749 0.47 -0.8 428,637 + EX28DRAFT_3749 0.48 -0.5 428,701 - EX28DRAFT_3749 0.52 +0.0 428,718 + EX28DRAFT_3749 0.53 -0.4 428,719 - EX28DRAFT_3749 0.53 +0.1 428,883 - EX28DRAFT_3749 0.64 +0.7 428,893 - EX28DRAFT_3749 0.65 -0.4 428,893 - EX28DRAFT_3749 0.65 +0.4 428,910 + EX28DRAFT_3749 0.66 +0.3 428,911 - EX28DRAFT_3749 0.66 +2.1 428,911 - EX28DRAFT_3749 0.66 +0.3 428,911 - EX28DRAFT_3749 0.66 +1.6 428,914 + EX28DRAFT_3749 0.66 -0.5 428,915 - EX28DRAFT_3749 0.66 +0.5 428,915 - EX28DRAFT_3749 0.66 -0.7 428,928 + EX28DRAFT_3749 0.67 +0.7 428,928 + EX28DRAFT_3749 0.67 +0.7 428,928 + EX28DRAFT_3749 0.67 +0.6 428,933 + EX28DRAFT_3749 0.67 -0.4 428,938 - EX28DRAFT_3749 0.68 -0.3 429,057 + EX28DRAFT_3749 0.76 -0.7 429,081 - EX28DRAFT_3749 0.77 +1.9 429,081 - EX28DRAFT_3749 0.77 -0.7 429,222 - EX28DRAFT_3749 0.86 +0.4 429,274 + EX28DRAFT_3749 0.90 +0.3 429,275 - +0.4 429,275 - +0.4 429,331 + -0.2 429,331 + +0.5 429,331 + -0.9 429,332 - -0.3 429,334 + +0.1 429,335 - -0.1 429,335 - -0.2 429,351 + +1.3 429,361 + +0.2 429,361 + -0.1 429,362 - +0.5 429,364 - -0.8 429,385 + -0.8 429,424 + +0.2 429,491 - +0.6 429,722 + EX28DRAFT_3750 0.11 +0.9 429,722 + EX28DRAFT_3750 0.11 -0.4 429,722 + EX28DRAFT_3750 0.11 +0.5 429,723 - EX28DRAFT_3750 0.11 -0.5 429,752 + EX28DRAFT_3750 0.14 -1.5 429,753 - EX28DRAFT_3750 0.14 -0.8 429,923 + EX28DRAFT_3750 0.25 +0.6 429,924 - EX28DRAFT_3750 0.25 +0.3 429,924 - EX28DRAFT_3750 0.25 -0.5 429,942 + EX28DRAFT_3750 0.27 +0.3 429,942 + EX28DRAFT_3750 0.27 +0.2 429,943 - EX28DRAFT_3750 0.27 -0.3 430,134 + EX28DRAFT_3750 0.40 +0.1 430,380 - EX28DRAFT_3750 0.57 +0.3
Or see this region's nucleotide sequence